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Sample GSM1359670

Query DataSets for GSM1359670

Status

Public on Apr 01, 2014

Title

33N

Sample type

RNA

Source name

lymph node metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 33
tissue: lymph node metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	14.38780928
HSTRNL:CONTROL:Plus/Plus	13.0175116
HUMTRAB:CONTROL:Plus/Plus	11.84138305
HUMTRF:CONTROL:Plus/Plus	12.53961171
HUMTRMI-No1:CONTROL:Plus/Plus	9.717587768
HUMTRMI-No2:CONTROL:Plus/Plus	11.37988834
HUMTRN:CONTROL:Plus/Plus	9.69851593
HUMTRS:CONTROL:Plus/Plus	13.24359606
HUMTRV1A:CONTROL:Plus/Plus	12.15244939
Human GAPDH:CONTROL:Plus/Plus	4.871637307
hsa-let-7a:MATURE:Plus/Plus	6.195901781
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	8.215215186
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	7.191019175
hsa-let-7d:MATURE:Plus/Plus	3.518630526
hsa-let-7d*:MATURE:Plus/Plus	6.748488665
hsa-let-7e:MATURE:Plus/Plus	6.389577899
hsa-let-7e*:MATURE:Plus/Plus	7.622561102
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359670_P593_33N_drusco_croce_pmt800_100207.gpr.gz	484.8 Kb	(ftp)(http)	GPR
Processed data included within Sample table