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Sample GSM1359671

Query DataSets for GSM1359671

Status

Public on Apr 01, 2014

Title

35F

Sample type

RNA

Source name

liver metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 35
tissue: liver metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	13.24359606
HSTRNL:CONTROL:Plus/Plus	10.66404397
HUMTRAB:CONTROL:Plus/Plus	9.896043439
HUMTRF:CONTROL:Plus/Plus	10.4007909
HUMTRMI-No1:CONTROL:Plus/Plus	9.677852926
HUMTRMI-No2:CONTROL:Plus/Plus	3.536081767
HUMTRN:CONTROL:Plus/Plus	9.405604022
HUMTRS:CONTROL:Plus/Plus	13.52739515
HUMTRV1A:CONTROL:Plus/Plus	11.37988834
Human GAPDH:CONTROL:Plus/Plus	3.536081767
hsa-let-7a:MATURE:Plus/Plus	7.987257512
hsa-let-7a*:MATURE:Plus/Plus	3.536081767
hsa-let-7b:MATURE:Plus/Plus	9.550798905
hsa-let-7b*:MATURE:Plus/Plus	3.536081767
hsa-let-7c:MATURE:Plus/Plus	8.528287411
hsa-let-7d:MATURE:Plus/Plus	3.536081767
hsa-let-7d*:MATURE:Plus/Plus	3.536081767
hsa-let-7e:MATURE:Plus/Plus	3.536081767
hsa-let-7e*:MATURE:Plus/Plus	3.536081767
hsa-let-7f:MATURE:Plus/Plus	3.536081767

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359671_P594_35F_drusco_croce_pmt800_100207.gpr.gz	454.7 Kb	(ftp)(http)	GPR
Processed data included within Sample table