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Sample GSM1359674

Query DataSets for GSM1359674

Status

Public on Apr 01, 2014

Title

41F

Sample type

RNA

Source name

liver metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 41
tissue: liver metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	13.52739515
HSTRNL:CONTROL:Plus/Plus	13.83391276
HUMTRAB:CONTROL:Plus/Plus	12.40405542
HUMTRF:CONTROL:Plus/Plus	13.0175116
HUMTRMI-No1:CONTROL:Plus/Plus	11.43639093
HUMTRMI-No2:CONTROL:Plus/Plus	12.03496147
HUMTRN:CONTROL:Plus/Plus	11.62512909
HUMTRS:CONTROL:Plus/Plus	12.83388598
HUMTRV1A:CONTROL:Plus/Plus	13.24359606
Human GAPDH:CONTROL:Plus/Plus	7.386365319
hsa-let-7a:MATURE:Plus/Plus	8.485672393
hsa-let-7a*:MATURE:Plus/Plus	3.494295548
hsa-let-7b:MATURE:Plus/Plus	9.97147882
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	9.498175682
hsa-let-7d:MATURE:Plus/Plus	7.239421323
hsa-let-7d*:MATURE:Plus/Plus	6.808406381
hsa-let-7e:MATURE:Plus/Plus	8.145056776
hsa-let-7e*:MATURE:Plus/Plus	6.922246216
hsa-let-7f:MATURE:Plus/Plus	3.494295548

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359674_P597_41F_drusco_croce_pmt800_100207.gpr.gz	480.2 Kb	(ftp)(http)	GPR
Processed data included within Sample table