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Sample GSM1359679

Query DataSets for GSM1359679

Status

Public on Apr 01, 2014

Title

30T

Sample type

RNA

Source name

tumor

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 30
tissue: colorectal carcinoma tumor

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	13.83391276
HSTRNL:CONTROL:Plus/Plus	10.02337245
HUMTRAB:CONTROL:Plus/Plus	12.83388598
HUMTRF:CONTROL:Plus/Plus	12.15244939
HUMTRMI-No1:CONTROL:Plus/Plus	10.10675418
HUMTRMI-No2:CONTROL:Plus/Plus	9.482124429
HUMTRN:CONTROL:Plus/Plus	10.5443525
HUMTRS:CONTROL:Plus/Plus	13.0175116
HUMTRV1A:CONTROL:Plus/Plus	11.84138305
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	3.509319323
hsa-let-7a*:MATURE:Plus/Plus	3.509319323
hsa-let-7b:MATURE:Plus/Plus	8.761176198
hsa-let-7b*:MATURE:Plus/Plus	4.300048648
hsa-let-7c:MATURE:Plus/Plus	5.254428575
hsa-let-7d:MATURE:Plus/Plus	3.518630526
hsa-let-7d*:MATURE:Plus/Plus	6.29812759
hsa-let-7e:MATURE:Plus/Plus	3.509319323
hsa-let-7e*:MATURE:Plus/Plus	8.951202606
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359679_P702_30T_drusco_croce_pmt800_91907.gpr.gz	495.1 Kb	(ftp)(http)	GPR
Processed data included within Sample table