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Sample GSM1359685

Query DataSets for GSM1359685

Status

Public on Apr 01, 2014

Title

34F

Sample type

RNA

Source name

liver metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 34
tissue: liver metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	15.01734785
HSTRNL:CONTROL:Plus/Plus	12.67700263
HUMTRAB:CONTROL:Plus/Plus	12.25364061
HUMTRF:CONTROL:Plus/Plus	13.24359606
HUMTRMI-No1:CONTROL:Plus/Plus	10.92423235
HUMTRMI-No2:CONTROL:Plus/Plus	11.4976113
HUMTRN:CONTROL:Plus/Plus	11.7653466
HUMTRS:CONTROL:Plus/Plus	13.83391276
HUMTRV1A:CONTROL:Plus/Plus	13.0175116
Human GAPDH:CONTROL:Plus/Plus	3.686090517
hsa-let-7a:MATURE:Plus/Plus	7.506710395
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	9.585253046
hsa-let-7b*:MATURE:Plus/Plus	3.670908331
hsa-let-7c:MATURE:Plus/Plus	8.77197004
hsa-let-7d:MATURE:Plus/Plus	6.748488665
hsa-let-7d*:MATURE:Plus/Plus	5.288498828
hsa-let-7e:MATURE:Plus/Plus	7.341523667
hsa-let-7e*:MATURE:Plus/Plus	8.127769302
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359685_P708_34F_drusco_croce_pmt800_91907.gpr.gz	500.7 Kb	(ftp)(http)	GPR
Processed data included within Sample table