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Sample GSM1359712

Query DataSets for GSM1359712

Status

Public on Apr 01, 2014

Title

47F

Sample type

RNA

Source name

liver metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 47
tissue: liver metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	14.38780928
HSTRNL:CONTROL:Plus/Plus	12.83388598
HUMTRAB:CONTROL:Plus/Plus	12.03496147
HUMTRF:CONTROL:Plus/Plus	13.52739515
HUMTRMI-No1:CONTROL:Plus/Plus	10.13414046
HUMTRMI-No2:CONTROL:Plus/Plus	11.30446736
HUMTRN:CONTROL:Plus/Plus	10.36790042
HUMTRS:CONTROL:Plus/Plus	13.83391276
HUMTRV1A:CONTROL:Plus/Plus	11.69415376
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	7.725108086
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	9.717587768
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	8.995393055
hsa-let-7d:MATURE:Plus/Plus	7.334961486
hsa-let-7d*:MATURE:Plus/Plus	6.89443013
hsa-let-7e:MATURE:Plus/Plus	6.727662898
hsa-let-7e*:MATURE:Plus/Plus	7.803738485
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359712_P736_47F_drusco_croce_pmt800_92007.gpr.gz	478.8 Kb	(ftp)(http)	GPR
Processed data included within Sample table