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Sample GSM1359713

Query DataSets for GSM1359713

Status

Public on Apr 01, 2014

Title

48T

Sample type

RNA

Source name

tumor

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 48
tissue: colorectal carcinoma tumor

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	14.38780928
HSTRNL:CONTROL:Plus/Plus	9.997472688
HUMTRAB:CONTROL:Plus/Plus	12.40405542
HUMTRF:CONTROL:Plus/Plus	12.53961171
HUMTRMI-No1:CONTROL:Plus/Plus	11.56663613
HUMTRMI-No2:CONTROL:Plus/Plus	9.05032011
HUMTRN:CONTROL:Plus/Plus	11.84138305
HUMTRS:CONTROL:Plus/Plus	12.03496147
HUMTRV1A:CONTROL:Plus/Plus	13.0175116
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	3.518630526
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	8.502910627
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	3.518630526
hsa-let-7d:MATURE:Plus/Plus	3.518630526
hsa-let-7d*:MATURE:Plus/Plus	7.601464509
hsa-let-7e:MATURE:Plus/Plus	5.768277533
hsa-let-7e*:MATURE:Plus/Plus	8.004812437
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359713_P737_48T_drusco_croce_pmt800_92007.gpr.gz	478.0 Kb	(ftp)(http)	GPR
Processed data included within Sample table