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Sample GSM1364046 Query DataSets for GSM1364046
Status Public on Apr 08, 2014
Title P0 Quadriceps Klhl40 WT 2
Sample type RNA
 
Source name WT 2 Quadriceps
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
age: 0 days
tissue: muscle
muscle type: Quadriceps
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent in accordance with the prescribed protocol. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Cy3-labeled cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 07, 2014
Last update date Apr 08, 2014
Contact name Ankit Garg
E-mail(s) ankitgarg2025@gmail.com
Organization name UT Southwestern Medical Center
Department Molecular Biology
Lab Eric N. Olson
Street address 6000 Harry Hines Blvd, NA 8.500
City Dallas
State/province TX
ZIP/Postal code 75235
Country USA
 
Platform ID GPL6887
Series (1)
GSE56570 Comparison of genes regulated in P0 Klhl40 WT and KO skeletal muscle

Data table header descriptions
ID_REF
VALUE quantile normalized signal
WT2.Avg_NBEADS
WT2.BEAD_STDERR
WT2.Detection Pval

Data table
ID_REF VALUE WT2.Avg_NBEADS WT2.BEAD_STDERR WT2.Detection Pval
ILMN_2735294 148.6804 40 5.257485 0
ILMN_2417611 102.3747 43 1.84081 0.6901709
ILMN_2545897 156.9523 52 3.546123 0
ILMN_2762289 110.5466 56 2.057829 0.1730769
ILMN_1248788 113.9139 31 3.166695 0.09188034
ILMN_2707227 117.8777 49 3.129482 0.05448718
ILMN_2896528 3273.048 47 84.62427 0
ILMN_2721178 992.8619 45 35.77966 0
ILMN_1227723 427.0508 32 13.69704 0
ILMN_2458837 100.1963 49 2.136868 0.849359
ILMN_3033922 1719.841 38 53.11996 0
ILMN_3092673 6302.662 49 224.8297 0
ILMN_1230777 3741.135 51 142.8545 0
ILMN_2730714 2617.819 54 76.2021 0
ILMN_1246069 4679.719 36 242.4866 0
ILMN_1232042 105.1221 48 1.908681 0.4690171
ILMN_1243193 608.279 48 23.79729 0
ILMN_2524361 107.0023 42 2.959785 0.3311966
ILMN_1233188 182.639 44 5.218438 0
ILMN_2543688 702.0929 63 22.92817 0

Total number of rows: 45281

Table truncated, full table size 1841 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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