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Sample GSM1364049 Query DataSets for GSM1364049
Status Public on Apr 08, 2014
Title P0 Quadriceps Klhl40 KO 2
Sample type RNA
 
Source name KO 2 Quadriceps
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Klhl40 knock out
age: 0 days
tissue: muscle
muscle type: Quadriceps
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent in accordance with the prescribed protocol. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Cy3-labeled cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 07, 2014
Last update date Apr 08, 2014
Contact name Ankit Garg
E-mail(s) ankitgarg2025@gmail.com
Organization name UT Southwestern Medical Center
Department Molecular Biology
Lab Eric N. Olson
Street address 6000 Harry Hines Blvd, NA 8.500
City Dallas
State/province TX
ZIP/Postal code 75235
Country USA
 
Platform ID GPL6887
Series (1)
GSE56570 Comparison of genes regulated in P0 Klhl40 WT and KO skeletal muscle

Data table header descriptions
ID_REF
VALUE quantile normalized signal
KO2.Avg_NBEADS
KO2.BEAD_STDERR
KO2.Detection Pval

Data table
ID_REF VALUE KO2.Avg_NBEADS KO2.BEAD_STDERR KO2.Detection Pval
ILMN_2735294 135.6586 38 2.714312 0.003205128
ILMN_2417611 100.8457 52 2.187404 0.8044872
ILMN_2545897 160.8418 40 3.291707 0
ILMN_2762289 118.3908 42 2.763528 0.04166667
ILMN_1248788 112.5769 23 4.832592 0.1217949
ILMN_2707227 108.6956 37 2.648906 0.232906
ILMN_2896528 2794.489 48 76.85078 0
ILMN_2721178 834.8864 38 26.13715 0
ILMN_1227723 355.5326 31 10.58139 0
ILMN_2458837 100.0762 41 1.924039 0.8675213
ILMN_3033922 1513.049 31 52.59335 0
ILMN_3092673 5943.599 46 149.0222 0
ILMN_1230777 3606.017 59 104.995 0
ILMN_2730714 2633.849 54 72.93637 0
ILMN_1246069 4130.871 51 152.787 0
ILMN_1232042 105.0421 40 2.238369 0.4668804
ILMN_1243193 560.8538 46 17.55513 0
ILMN_2524361 105.797 40 2.535264 0.4113248
ILMN_1233188 187.0265 57 4.517176 0
ILMN_2543688 703.5045 58 21.45245 0

Total number of rows: 45281

Table truncated, full table size 1841 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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