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Sample GSM136678 Query DataSets for GSM136678
Status Public on Sep 19, 2006
Title Livers of mice fed an atherogenic diet for 6 weeks
Sample type RNA
 
Channel 1
Source name Livers of mice fed a standard chow
Organism Mus musculus
Characteristics Strain: C57Bl/6J.
Gender: Male.
Livers of mice fed a standard chow for 6 weeks
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name Livers of mice fed an atherogenic diet
Organism Mus musculus
Characteristics Strain: C57Bl/6J.
Gender: Male.
Livers of mice fed an atherogenic diet for 6 weeks.
The atherogenic diet containes (by weight) 14% fat, 1.25% cholesterol, and 0.5% sodium cholate.
Extracted molecule total RNA
Label Cy5
 
 
Description RNA amplified before cDNA synthesis.
Data processing Lowess normalization (GeneSpring software)
 
Submission date Sep 16, 2006
Last update date Sep 19, 2006
Contact name Naoto Matsuzawa-Nagata
E-mail(s) nmatsu@m-kanazawa.jp
Phone +81-76-265-2000
Fax +81-76-234-4280
Organization name Kanazawa University Graduate School of Medical Science
Department Medicinal Infomation
Street address 13-1 Takara-machi
City Kanazawa
State/province Ishikawa
ZIP/Postal code 920-8641
Country Japan
 
Platform ID GPL1292
Series (1)
GSE5852 Livers of mice fed an atherogenic diet for 6 or 24 weeks

Data table header descriptions
ID_REF
FLAG Quality of spot (0: good, -50: bad)
VALUE Log10 (Cy5/Cy3), but with flagged values removed
CH1_SIG Signal intensity of Cy3
CH1_BKD Background intensity of Cy3
CH2_SIG Signal intensity of Cy5
CH2_BKD Background intensity of Cy5

Data table
ID_REF FLAG VALUE CH1_SIG CH1_BKD CH2_SIG CH2_BKD
AGmmA010101 0 0.049 560 301 521 231
AGmmA010102 0 0.319 520 311 662 227
AGmmA010103 0 0.027 801 311 746 224
AGmmA010104 0 0.017 481 313 396 221
AGmmA010105 0 0.109 610 331 576 217
AGmmA010106 0 -0.041 1405 313 1209 215
AGmmA010107 0 -0.022 424 311 321 214
AGmmA010108 0 0.2 563 311 612 213
AGmmA010109 0 0.399 965 314 1846 215
AGmmA010110 0 -0.003 1370 319 1274 230
AGmmA010111 0 0.433 24337 312 65338 211
AGmmA010112 0 0.467 432 308 578 214
AGmmA010113 0 -0.314 2623 306 1357 234
AGmmA010114 0 0.111 437 314 389 230
AGmmA010115 0 0.15 2546 316 3371 224
AGmmA010116 0 0.25 1251 322 1875 223
AGmmA010117 0 -0.008 32700 363 31941 226
AGmmA010118 0 0.058 1362 321 1406 217
AGmmA010119 0 0.175 1422 313 1874 215
AGmmA010120 0 0.071 527 312 468 215

Total number of rows: 28844

Table truncated, full table size 1043 Kbytes.




Supplementary data files not provided

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