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Sample GSM136679 Query DataSets for GSM136679
Status Public on Sep 19, 2006
Title Livers of mice fed an atherogenic with a high-fat diet for 6 weeks
Sample type RNA
 
Channel 1
Source name Livers of mice fed a standard chow for 6 weeks
Organism Mus musculus
Characteristics Strain: C57Bl/6J
Gender: Male
Livers of mice fed a standard chow for 6 weeks
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name Livers of mice fed an atherogenic with a high-fat diet for 6 weeks
Organism Mus musculus
Characteristics Strain: C57Bl/6J
Gender: Male
Livers of mice fed an atherogenic with a high-fat (Ath+HF) diet for 6 weeks. The Ath+HF contains (by weight) 60% fat, 1.25% cholesterol, and 0.5% sodium cholate.
Extracted molecule total RNA
Label Cy5
 
 
Description RNA amplified before cDNA synthesis.
Data processing Lowess normalization (GeneSpring software)
 
Submission date Sep 16, 2006
Last update date Sep 19, 2006
Contact name Naoto Matsuzawa-Nagata
E-mail(s) nmatsu@m-kanazawa.jp
Phone +81-76-265-2000
Fax +81-76-234-4280
Organization name Kanazawa University Graduate School of Medical Science
Department Medicinal Infomation
Street address 13-1 Takara-machi
City Kanazawa
State/province Ishikawa
ZIP/Postal code 920-8641
Country Japan
 
Platform ID GPL1292
Series (1)
GSE5852 Livers of mice fed an atherogenic diet for 6 or 24 weeks

Data table header descriptions
ID_REF
FLAG Quality of spot (0: good, -50: bad)
VALUE Log10 (Cy5/Cy3), but with flagged values removed
CH1_SIG Signal intensity of Cy3
CH1_BKD Background intensity of Cy3
CH2_SIG Signal intensity of Cy5
CH2_BKD Background intensity of Cy5

Data table
ID_REF FLAG VALUE CH1_SIG CH1_BKD CH2_SIG CH2_BKD
AGmmA010101 0 -0.105 843 301 790 364
AGmmA010102 0 -0.079 536 302 565 370
AGmmA010103 0 0.052 875 283 1046 379
AGmmA010104 0 -0.018 577 289 732 456
AGmmA010105 0 -0.013 649 304 833 499
AGmmA010106 0 0.069 945 314 1296 556
AGmmA010107 0 -0.147 637 307 730 495
AGmmA010108 0 -0.024 792 288 876 399
AGmmA010109 0 0.084 1259 289 1589 413
AGmmA010110 0 -0.042 3026 295 2829 352
AGmmA010111 0 0.221 12277 275 20340 357
AGmmA010112 0 0.077 532 278 662 359
AGmmA010113 0 -0.481 5142 303 1972 372
AGmmA010114 0 -0.076 611 297 637 373
AGmmA010115 0 -0.034 3336 281 3210 387
AGmmA010116 0 0.055 1237 289 1540 464
AGmmA010117 0 -0.078 27516 315 23325 576
AGmmA010118 0 -0.095 3798 316 3384 583
AGmmA010119 0 0.123 3508 307 4756 510
AGmmA010120 0 -0.062 669 277 747 407

Total number of rows: 28845

Table truncated, full table size 1048 Kbytes.




Supplementary data files not provided

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