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Sample GSM1375901 Query DataSets for GSM1375901
Status Public on Jul 01, 2014
Title MPNST_Rap_2
Sample type RNA
 
Source name NPcis Mouse MPNST_Rapamycin
Organism Mus musculus
Characteristics tissue: Primary mouse mouse malignant peripheral nerve sheath tumor (MPNST)
genetic model: NPcis
Treatment protocol 14h with vehicle, or 5mg/kg Rapamycin IP, or 1.5mg/kg PD-0325901 OG twice daily, or combination of 5mg/kg rapamycin IP and 1.5mg/kg PD-0325901 OG twice daily
Extracted molecule total RNA
Extraction protocol Trizol followed by RNeasy cleanup
Label biotin
Label protocol Nugen Applause WT-amp ST kit
 
Hybridization protocol Not provided
Scan protocol Not provided
Description Gene expression data from rapamycin treated tumor
Data processing BRB array tools
 
Submission date Apr 28, 2014
Last update date Jul 01, 2014
Contact name Clare Malone
Organization name Harvard Medical School - Brigham Women's Hospital
Department Genetics
Lab Cichowski Lab
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6246
Series (1)
GSE57141 Defining key signaling nodes and therapeutic biomarkers in NF1-mutant cancers

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
10338001 11.78474617
10338003 10.28803253
10338004 9.308736801
10338017 12.45478725
10338025 8.730465889
10338026 12.60658932
10338029 9.627129555
10338035 9.155400276
10338036 9.139492035
10338037 5.283946991
10338041 10.75421333
10338042 9.943809509
10338044 11.70859528
10338047 6.734549999
10338056 5.073439598
10338059 12.9801712
10338060 4.969250202
10338063
10338064 5.598333359
10338065 6.523024559

Total number of rows: 35512

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM1375901_5b_1844H.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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