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Sample GSM138406 Query DataSets for GSM138406
Status Public on Sep 26, 2008
Title Nomal prostate/common reference-1
Sample type RNA
 
Channel 1
Source name normal prostate tissue
Organism Homo sapiens
Characteristics normal prostate tissue
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Common reference
Organism Homo sapiens
Characteristics a pool of RNA from mixed human embryo tissues
Extracted molecule total RNA
Label Cy3
 
 
Description normal prostate tissue versus common reference
Data processing VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)
 
Submission date Oct 03, 2006
Last update date Sep 26, 2007
Contact name Mei Jiang
E-mail(s) 042023070@fudan.edu.cn
Organization name Fudan University
Department Institute of Genetics
Street address Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL4381
Series (1)
GSE5957 gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE log2 ratio of the medians
F1 Median Median feature foreground intensity at wavelength 635 nm
B1 Median Median feature background intensity at wavelength 635 nm
F2 Median Median feature foreground intensity at wavelength 532 nm
B2 Median Median feature background intensity at wavelength 532 nm
F1 Median - B1 Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2 Median feature foreground minus background intensity at wavelength 532 nm
Flags Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF VALUE F1 Median B1 Median F2 Median B2 Median F1 Median - B1 F2 Median - B2 Flags RATIO
1 -0.3203 8641 1409 9735 705 7232 9030 0 0.800885936
2 0.0877 2739 1026 2211 599 1713 1612 0 1.062655087
3 0.9695 6420 988 3355 581 5432 2774 0 1.958183129
4 0.4704 2728 1010 1791 551 1718 1240 0 1.385483871
5 -0.3135 21262 984 25766 567 20278 25199 0 0.804714473
6 0.6772 4297 1019 2672 622 3278 2050 0 1.59902439
7 -0.4011 2952 1024 3154 608 1928 2546 0 0.7572663
8 -2.3481 2358 1059 7294 680 1299 6614 0 0.196401572
9 0.8986 3802 1041 2085 604 2761 1481 0 1.864280891
10 -0.2055 2646 1104 2422 644 1542 1778 0 0.867266592
11 -1.0814 2518 1097 3776 769 1421 3007 0 0.472564017
12 3.6013 15599 1193 2090 903 14406 1187 0 12.13647852
13 2.0006 5866 1016 1991 779 4850 1212 0 4.001650165
14 0.4145 2934 1260 2310 1054 1674 1256 0 1.332802548
15 -2.9328 1377 1097 2900 762 280 2138 0 0.130963517
16 -1.5045 2454 1096 4550 697 1358 3853 0 0.352452634
17 1.7309 13881 1151 4492 657 12730 3835 0 3.319426336
18 1240 1188 844 635 52 209 -50 0.248803828
19 2.4044 12698 1167 2825 647 11531 2178 0 5.294306703
20 2.1952 25349 1256 5978 717 24093 5261 0 4.579547615

Total number of rows: 14112

Table truncated, full table size 725 Kbytes.




Supplementary data files not provided
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