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Sample GSM138412 Query DataSets for GSM138412
Status Public on Sep 26, 2008
Title Nomal prostate/common reference-2
Sample type RNA
 
Channel 1
Source name normal prostate tissue
Organism Homo sapiens
Characteristics normal prostate tissue
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Common reference
Organism Homo sapiens
Characteristics a pool of RNA from mixed human embryo tissues
Extracted molecule total RNA
Label Cy3
 
 
Description normal prostate tissue versus common reference
Data processing VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)
 
Submission date Oct 03, 2006
Last update date Sep 26, 2007
Contact name Mei Jiang
E-mail(s) 042023070@fudan.edu.cn
Organization name Fudan University
Department Institute of Genetics
Street address Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL4381
Series (1)
GSE5957 gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE log2 ratio of the medians
F1 Median Median feature foreground intensity at wavelength 635 nm
B1 Median Median feature background intensity at wavelength 635 nm
F2 Median Median feature foreground intensity at wavelength 532 nm
B2 Median Median feature background intensity at wavelength 532 nm
F1 Median - B1 Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2 Median feature foreground minus background intensity at wavelength 532 nm
Flags Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF VALUE F1 Median B1 Median F2 Median B2 Median F1 Median - B1 F2 Median - B2 Flags RATIO
1 -0.5211 2620 648 3230 400 1972 2830 0 0.696819788
2 -0.2947 1640 603 1662 390 1037 1272 0 0.815251572
3 -0.0452 3101 683 2883 388 2418 2495 0 0.969138277
4 -0.4874 1631 683 1747 418 948 1329 0 0.713318284
5 -0.9891 11069 662 21057 399 10407 20658 0 0.503775777
6 -0.5552 1887 615 2220 351 1272 1869 0 0.680577849
7 -1.2586 1630 596 2845 371 1034 2474 0 0.417946645
8 -2.3649 1639 601 5725 378 1038 5347 0 0.194127548
9 1.1968 5033 625 2282 359 4408 1923 0 2.29225169
10 0.1420 2610 637 2150 362 1973 1788 0 1.103467562
11 0.8314 5934 594 3411 410 5340 3001 0 1.779406864
12 2.1171 8191 612 2143 396 7579 1747 0 4.338294219
13 0.7779 2711 626 1568 352 2085 1216 0 1.714638158
14 0.0615 2121 611 1788 341 1510 1447 0 1.043538355
15 -1.1542 1749 619 2893 378 1130 2515 0 0.449304175
16 -0.6262 3264 675 4342 346 2589 3996 0 0.647897898
17 2.8533 32845 688 4772 322 32157 4450 0 7.226292135
18 810 658 581 343 152 238 -50 0.638655462
19 2.5415 17340 619 3195 323 16721 2872 0 5.822075209
20 2.4129 37391 684 7269 376 36707 6893 0 5.325257508

Total number of rows: 14112

Table truncated, full table size 709 Kbytes.




Supplementary data files not provided
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