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Sample GSM138473

Query DataSets for GSM138473

Status

Public on Sep 26, 2008

Title

prostate cancer/common reference-4

Sample type

RNA

Channel 1

Source name

prostate cancer

Organism

Characteristics

Tumor: prostate cancer Gender: male Sample assession number: No.04

Extracted molecule

total RNA

Label

Cy5

Channel 2

Source name

common reference

Organism

Characteristics

a pool of RNA from mixed human embryo tissues

Extracted molecule

total RNA

Label

Cy3

Description

prostate cancer versus common reference

Data processing

VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)

Submission date

Oct 03, 2006

Last update date

Sep 26, 2007

Contact name

Mei Jiang

E-mail(s)

042023070@fudan.edu.cn

Organization name

Fudan University

Department

Institute of Genetics

Street address

Handan Road

City

Shanghai

ZIP/Postal code

200433

Country

China

Platform ID

Series (1)

gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE	log2 ratio of the medians
F1 Median	Median feature foreground intensity at wavelength 635 nm
B1 Median	Median feature background intensity at wavelength 635 nm
F2 Median	Median feature foreground intensity at wavelength 532 nm
B2 Median	Median feature background intensity at wavelength 532 nm
F1 Median - B1	Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2	Median feature foreground minus background intensity at wavelength 532 nm
Flags	Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO	Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF	VALUE	F1 Median	B1 Median	F2 Median	B2 Median	F1 Median - B1	F2 Median - B2	Flags	RATIO
1	0.4656	5388	1665	3011	315	3723	2696	0	1.380934718
2	0.1989	2842	1747	1415	461	1095	954	0	1.147798742
3	-1.3795	2464	1354	3178	290	1110	2888	0	0.38434903
4	1.1620	3685	1331	1366	314	2354	1052	0	2.237642586
5	-1.2450	9545	1337	19717	262	8208	19455	0	0.421896685
6	0.1172	3056	1364	1824	264	1692	1560	0	1.084615385
7	-0.7124	2465	1231	2266	244	1234	2022	0	0.610286845
8	-1.9791	2268	1259	4237	259	1009	3978	0	0.253645048
9	1.3947	5730	1310	1946	265	4420	1681	0	2.629387269
10	0.5677	3634	1347	1812	269	2287	1543	0	1.482177576
11	0.6619	4607	1286	2361	262	3321	2099	0	1.582181991
12	2.2142	7424	1313	1576	259	6111	1317	0	4.640091116
13	1.1657	3481	1287	1272	294	2194	978	0	2.243353783
14		1988	1345	886	297	643	589	-50	1.091680815
15	-0.4890	2550	1410	1921	321	1140	1600	0	0.7125
16	-1.6155	2270	1383	2970	252	887	2718	0	0.326342899
17	3.0295	27189	1314	3420	251	25875	3169	0	8.165036289
18		1858	1310	475	271	548	204	-50	2.68627451
19	2.5084	13232	1357	2361	274	11875	2087	0	5.689985625
20	2.8266	34419	1276	4954	282	33143	4672	0	7.093964041

Total number of rows: 14112

Table truncated, full table size 702 Kbytes.

Supplementary data files not provided

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