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Sample GSM138480 Query DataSets for GSM138480
Status Public on Sep 26, 2008
Title prostate cancer/common reference-5
Sample type RNA
 
Channel 1
Source name prostate cancer
Organism Homo sapiens
Characteristics Tumor: prostate cancer Gender: male Sample assession number: No.05
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name common reference
Organism Homo sapiens
Characteristics a pool of RNA from mixed human embryo tissues
Extracted molecule total RNA
Label Cy3
 
 
Description prostate cancer versus common reference
Data processing VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)
 
Submission date Oct 03, 2006
Last update date Sep 26, 2007
Contact name Mei Jiang
E-mail(s) 042023070@fudan.edu.cn
Organization name Fudan University
Department Institute of Genetics
Street address Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL4381
Series (1)
GSE5957 gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE log2 ratio of the medians
F1 Median Median feature foreground intensity at wavelength 635 nm
B1 Median Median feature background intensity at wavelength 635 nm
F2 Median Median feature foreground intensity at wavelength 532 nm
B2 Median Median feature background intensity at wavelength 532 nm
F1 Median - B1 Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2 Median feature foreground minus background intensity at wavelength 532 nm
Flags Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF VALUE F1 Median B1 Median F2 Median B2 Median F1 Median - B1 F2 Median - B2 Flags RATIO
1 0.2095 3588 1405 2316 428 2183 1888 0 1.15625
2 0.6031 4073 1319 2223 410 2754 1813 0 1.519029233
3 1.6252 11693 1396 3719 381 10297 3338 0 3.084781306
4 1.2047 4574 1414 1809 438 3160 1371 0 2.304886944
5 -0.8708 18677 1340 32167 463 17337 31704 0 0.546839516
6 0.4306 4319 1335 2645 431 2984 2214 0 1.347786811
7 -0.0556 4479 1351 3655 404 3128 3251 0 0.962165488
8 -1.6773 3442 1212 7543 411 2230 7132 0 0.312675266
9 0.8514 5646 1276 2823 401 4370 2422 0 1.804293972
10 0.8353 5356 1279 2684 399 4077 2285 0 1.784245077
11 0.7785 7399 1210 4023 415 6189 3608 0 1.715354767
12 2.0690 10403 1243 2561 378 9160 2183 0 4.196060467
13 1.4629 4800 1244 1648 358 3556 1290 0 2.756589147
14 0.0591 3642 1250 2701 405 2392 2296 0 1.041811847
15 -1.3225 2252 1162 3136 410 1090 2726 0 0.399853265
16 -0.8562 3531 1181 4596 342 2350 4254 0 0.552421251
17 2.7430 41151 1212 6295 329 39939 5966 0 6.694435132
18 1866 1223 637 379 643 258 -50 2.492248062
19 2.1691 19271 1191 4417 397 18080 4020 0 4.497512438
20 2.5217 56177 1197 9941 367 54980 9574 0 5.742636307

Total number of rows: 14112

Table truncated, full table size 711 Kbytes.




Supplementary data files not provided
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