NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM138483 Query DataSets for GSM138483
Status Public on Sep 26, 2008
Title prostate cancer/common reference-7
Sample type RNA
 
Channel 1
Source name prostate cancer
Organism Homo sapiens
Characteristics Tumor: prostate cancer Gender: male Sample assession number: No.07
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name common reference
Organism Homo sapiens
Characteristics a pool of RNA from mixed human embryo tissues
Extracted molecule total RNA
Label Cy3
 
 
Description prostate cancer versus common reference
Data processing VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)
 
Submission date Oct 03, 2006
Last update date Sep 26, 2007
Contact name Mei Jiang
E-mail(s) 042023070@fudan.edu.cn
Organization name Fudan University
Department Institute of Genetics
Street address Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL4381
Series (1)
GSE5957 gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE log2 ratio of the medians
F1 Median Median feature foreground intensity at wavelength 635 nm
B1 Median Median feature background intensity at wavelength 635 nm
F2 Median Median feature foreground intensity at wavelength 532 nm
B2 Median Median feature background intensity at wavelength 532 nm
F1 Median - B1 Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2 Median feature foreground minus background intensity at wavelength 532 nm
Flags Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF VALUE F1 Median B1 Median F2 Median B2 Median F1 Median - B1 F2 Median - B2 Flags RATIO
1 -0.3629 4843 980 5409 441 3863 4968 0 0.77757649
2 -0.1621 2035 1068 1554 472 967 1082 0 0.893715342
3 -0.8042 2723 930 3576 445 1793 3131 0 0.572660492
4 1345 809 972 406 536 566 -50 0.946996466
5 -1.8528 7376 808 24129 405 6568 23724 0 0.276850447
6 -0.4889 2020 897 1947 371 1123 1576 0 0.712563452
7 -0.3671 2143 973 1890 381 1170 1509 0 0.775347913
8 -1.8348 2272 1112 4581 443 1160 4138 0 0.280328661
9 4.2392 33727 1056 2203 473 32671 1730 0 18.8849711
10 3.2054 9415 1104 1328 427 8311 901 0 9.224195339
11 9661 1275 1870 462 8386 1408 -50 5.955965909
12 7536 1275 801 437 6261 364 -50 17.20054945
13 1.7479 4759 1407 1478 480 3352 998 0 3.358717435
14 1932 1408 994 447 524 547 -50 0.957952468
15 1848 1252 1283 431 596 852 -50 0.699530516
16 1530 914 1032 406 616 626 -50 0.984025559
17 4.9157 65395 891 2570 433 64504 2137 0 30.18437061
18 1760 863 659 399 897 260 -50 3.45
19 4.9367 55736 852 2189 397 54884 1792 0 30.62723214
20 4.0459 65535 920 4285 373 64615 3912 0 16.51712679

Total number of rows: 14112

Table truncated, full table size 708 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap