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Sample GSM138513 Query DataSets for GSM138513
Status Public on Sep 26, 2008
Title prostate cancer/common reference-12
Sample type RNA
 
Channel 1
Source name prostate cancer
Organism Homo sapiens
Characteristics Tumor: prostate cancer Gender: male Sample assession number: No.12
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name common reference
Organism Homo sapiens
Characteristics a pool of RNA from mixed human embryo tissues
Extracted molecule total RNA
Label Cy3
 
 
Description prostate cancer versus common reference
Data processing VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)
 
Submission date Oct 03, 2006
Last update date Sep 26, 2007
Contact name Mei Jiang
E-mail(s) 042023070@fudan.edu.cn
Organization name Fudan University
Department Institute of Genetics
Street address Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL4381
Series (1)
GSE5957 gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE log2 ratio of the medians
F1 Median Median feature foreground intensity at wavelength 635 nm
B1 Median Median feature background intensity at wavelength 635 nm
F2 Median Median feature foreground intensity at wavelength 532 nm
B2 Median Median feature background intensity at wavelength 532 nm
F1 Median - B1 Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2 Median feature foreground minus background intensity at wavelength 532 nm
Flags Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF VALUE F1 Median B1 Median F2 Median B2 Median F1 Median - B1 F2 Median - B2 Flags RATIO
1 -0.8745 1999 511 3309 581 1488 2728 0 0.545454545
2 -0.4758 1981 499 2630 569 1482 2061 0 0.719068413
3 0.5026 5114 569 3794 586 4545 3208 0 1.416770574
4 -0.1734 1941 680 2249 827 1261 1422 0 0.886779184
5 -0.2053 33652 582 38771 644 33070 38127 0 0.867364335
6 -1.5046 1908 554 4433 591 1354 3842 0 0.352420614
7 -1.1051 2125 465 4111 540 1660 3571 0 0.464855783
8 -2.1693 2382 456 9192 529 1926 8663 0 0.22232483
9 1.1798 5733 466 2890 565 5267 2325 0 2.265376344
10 0.8030 5100 473 3202 550 4627 2652 0 1.744720965
11 0.3425 7321 479 5960 564 6842 5396 0 1.267976279
12 1.4481 5470 507 2369 550 4963 1819 0 2.72842221
13 0.6353 3027 492 2213 581 2535 1632 0 1.553308824
14 0.2167 2326 476 2154 562 1850 1592 0 1.162060302
15 -0.7459 2266 486 3528 543 1780 2985 0 0.596314908
16 0.1116 4101 488 3853 509 3613 3344 0 1.080442584
17 2.0964 22642 541 5705 537 22101 5168 0 4.276509288
18 846 540 685 553 306 132 -50 2.318181818
19 2.8808 37761 543 5645 592 37218 5053 0 7.36552543
20 2.7277 65535 542 10412 600 64993 9812 0 6.623827966

Total number of rows: 14112

Table truncated, full table size 732 Kbytes.




Supplementary data files not provided
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