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Sample GSM138515 Query DataSets for GSM138515
Status Public on Sep 26, 2008
Title prostate cancer/common reference-13
Sample type RNA
 
Channel 1
Source name prostate cancer
Organism Homo sapiens
Characteristics Tumor: prostate cancer Gender: male Sample assession number: No.13
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name common reference
Organism Homo sapiens
Characteristics a pool of RNA from mixed human embryo tissues
Extracted molecule total RNA
Label Cy3
 
 
Description prostate cancer versus common reference
Data processing VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)
 
Submission date Oct 03, 2006
Last update date Sep 26, 2007
Contact name Mei Jiang
E-mail(s) 042023070@fudan.edu.cn
Organization name Fudan University
Department Institute of Genetics
Street address Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL4381
Series (1)
GSE5957 gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE log2 ratio of the medians
F1 Median Median feature foreground intensity at wavelength 635 nm
B1 Median Median feature background intensity at wavelength 635 nm
F2 Median Median feature foreground intensity at wavelength 532 nm
B2 Median Median feature background intensity at wavelength 532 nm
F1 Median - B1 Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2 Median feature foreground minus background intensity at wavelength 532 nm
Flags Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF VALUE F1 Median B1 Median F2 Median B2 Median F1 Median - B1 F2 Median - B2 Flags RATIO
1 -0.1253 3134 742 3096 487 2392 2609 0 0.91682637
2 -1.4996 1520 708 2786 490 812 2296 0 0.353658537
3 -0.0464 5249 691 5165 458 4558 4707 0 0.968345018
4 -0.5451 1666 688 1877 450 978 1427 0 0.685353889
5 -1.0850 18126 610 37599 442 17516 37157 0 0.471405119
6 -1.2430 2092 593 3982 434 1499 3548 0 0.422491545
7 -1.9322 1863 644 5117 465 1219 4652 0 0.262037833
8 -2.0787 2349 641 7716 501 1708 7215 0 0.236729037
9 1.2090 7878 603 3605 458 7275 3147 0 2.311725453
10 -0.2687 2901 625 3167 425 2276 2742 0 0.830051058
11 0.4319 6620 640 4884 451 5980 4433 0 1.348973607
12 1.5008 7707 615 2988 482 7092 2506 0 2.830007981
13 1.3872 3906 707 1686 463 3199 1223 0 2.615699101
14 0.6010 3446 649 2326 482 2797 1844 0 1.51681128
15 -0.5029 2625 671 3252 483 1954 2769 0 0.705669917
16 -1.2300 2947 662 5851 491 2285 5360 0 0.42630597
17 2.3299 44300 796 9171 518 43504 8653 0 5.027620478
18 756 728 808 506 28 302 -50 0.092715232
19 1.9655 24840 602 6660 454 24238 6206 0 3.90557525
20 2.3060 65535 602 13571 440 64933 13131 0 4.945015612

Total number of rows: 14112

Table truncated, full table size 718 Kbytes.




Supplementary data files not provided
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