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Sample GSM138521 Query DataSets for GSM138521
Status Public on Sep 26, 2008
Title prostate cancer/common reference-17
Sample type RNA
 
Channel 1
Source name prostate cancer
Organism Homo sapiens
Characteristics Tumor: prostate cancer Gender: male Sample assession number: No.17
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name common reference
Organism Homo sapiens
Characteristics a pool of RNA from mixed human embryo tissues
Extracted molecule total RNA
Label Cy3
 
 
Description prostate cancer versus common reference
Data processing VALUE is log2 ratio of the median of Channel 1 (635 nm) to Channel 2 (532 nm)
 
Submission date Oct 03, 2006
Last update date Sep 26, 2007
Contact name Mei Jiang
E-mail(s) 042023070@fudan.edu.cn
Organization name Fudan University
Department Institute of Genetics
Street address Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL4381
Series (1)
GSE5957 gene profiles in prostate cancer and normal prostate tissues

Data table header descriptions
ID_REF
VALUE log2 ratio of the medians
F1 Median Median feature foreground intensity at wavelength 635 nm
B1 Median Median feature background intensity at wavelength 635 nm
F2 Median Median feature foreground intensity at wavelength 532 nm
B2 Median Median feature background intensity at wavelength 532 nm
F1 Median - B1 Median feature foreground minus background intensity at wavelength 635 nm
F2 Median - B2 Median feature foreground minus background intensity at wavelength 532 nm
Flags Type of the flag associated with a feature: 0 represents spot valid and <0 represents spot invalid
RATIO Ratio of the median of Channel 1 (usually 635 nm) to Channel 2 (usually 532 nm)

Data table
ID_REF VALUE F1 Median B1 Median F2 Median B2 Median F1 Median - B1 F2 Median - B2 Flags RATIO
1 -1.2599 1865 682 3388 555 1183 2833 0 0.417578539
2 1.7372 5476 682 1981 543 4794 1438 0 3.33379694
3 0.7125 2918 696 1831 475 2222 1356 0 1.638643068
4 -1.7744 1160 642 2246 474 518 1772 0 0.292325056
5 0.0962 1646 669 1426 512 977 914 0 1.06892779
6 -0.3240 5161 649 6099 451 4512 5648 0 0.798866856
7 0.9814 4188 636 2212 413 3552 1799 0 1.974430239
8 817 629 651 422 188 229 -50 0.820960699
9 1019 663 704 464 356 240 -50 1.483333333
10 -0.9353 1513 589 2193 426 924 1767 0 0.522920204
11 -0.5038 2800 589 3553 418 2211 3135 0 0.705263158
12 710 634 579 462 76 117 -50 0.64957265
13 -0.2953 3306 572 3809 454 2734 3355 0 0.81490313
14 620 654 562 490 -34 72 -50 -0.472222222
15 877 629 509 428 248 81 -50 3.061728395
16 -0.2790 2096 601 2250 436 1495 1814 0 0.824145535
17 -3.4947 984 562 5116 359 422 4757 0 0.088711373
18 -2.9749 1234 639 5114 436 595 4678 0 0.127191107
19 2.1365 12034 589 3014 411 11445 2603 0 4.396849789
20 -0.9717 1650 543 2593 422 1107 2171 0 0.50990327

Total number of rows: 14112

Table truncated, full table size 705 Kbytes.




Supplementary data files not provided
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