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Sample GSM138595 Query DataSets for GSM138595
Status Public on Jul 11, 2008
Title HNL-1 (normal liver)
Sample type RNA
 
Source name human liver
Organism Homo sapiens
Characteristics human liver
Extracted molecule total RNA
Extraction protocol Total RNA was prepared by Trizol extraction
Label Biotin
Label protocol see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
 
Hybridization protocol see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
Scan protocol see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
Description Tissue
Data processing The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
 
Submission date Oct 04, 2006
Last update date Aug 28, 2018
Contact name Ann-Ping Tsou
E-mail(s) aptsou@ym.edu.tw
Organization name National Yang-Ming University
Street address No. 155, Sec. 2, Li-Nong St., Beitou District
City Taipei
ZIP/Postal code 112
Country Taiwan
 
Platform ID GPL570
Series (1)
GSE6222 Genome-wide analysis of gene expression patterns in human liver cancers
Relations
Reanalyzed by GSE51798
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Flagged as present, absent, or marginal by Affymetrix

Data table
ID_REF VALUE ABS_CALL
1007_s_at 55.2 P
1053_at 37.3 P
117_at 27.5 P
121_at 152.4 P
1255_g_at 3.5 A
1294_at 63 P
1316_at 16.1 A
1320_at 8.8 A
1405_i_at 45.8 P
1431_at 5422.7 P
1438_at 3.4 A
1487_at 127.6 P
1494_f_at 3517.1 P
1552256_a_at 567.3 P
1552257_a_at 150 P
1552258_at 8 A
1552261_at 0.9 A
1552263_at 8.2 A
1552264_a_at 35.1 A
1552266_at 11.5 A

Total number of rows: 54675

Table truncated, full table size 925 Kbytes.




Supplementary file Size Download File type/resource
GSM138595.CEL.gz 4.5 Mb (ftp)(http) CEL

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