see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
Hybridization protocol
see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
Scan protocol
see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
Description
HCC cell line
Data processing
The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
