|
| Status |
Public on Jul 11, 2014 |
| Title |
Lin-CD34+ (CB) 1 |
| Sample type |
SRA |
| |
|
| Source name |
Lin-CD34+ (CB) cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Lin-CD34+ Cord blood cells
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Illumina TruSeq, PE 51x2 and SR 51
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Sample 1
|
| Data processing |
Illumina Casava1.8 software used for basecalling.
Sequence reads were aligned to hg18 using TopHat with default parameters
FPKM were obtained using CuffLinks with upper-quartile and GC normalization
Genome_build: hg18
Supplementary_files_format_and_content: tab-delimited FPKM values for each Refseq transcript
|
| |
|
| Submission date |
May 14, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Olivier Elemento |
| E-mail(s) |
ole2001@med.cornell.edu
|
| Organization name |
WEILL MEDICAL COLLEGE OF CORNELL UNIV
|
| Street address |
1305 York Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10021 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE57662 |
Reprogramming of Endothelium Into Hematopoietic Progenitors by Defined Factors and Vascular Induction |
|
| Relations |
| SRA |
SRX542537 |
| BioSample |
SAMN02777367 |
