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Sample GSM139137 Query DataSets for GSM139137
Status Public on Oct 15, 2006
Title MIT/WI Bartel C.elegans 454 2006
Sample type SRA
 
Source name mixed-stage Caenorhabditis elegans with contaminating Escherichia coli
Organisms Escherichia coli; Caenorhabditis elegans
Characteristics mixed-stage, wild-type, N2, 20 deg C
Extracted molecule total RNA
Extraction protocol total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection other
Instrument model 454 GS
 
Description small RNAs
Data processing extraction of sequences flanked by perfect 9mer matches to the expected adjacent adapter sequences
 
Submission date Oct 07, 2006
Last update date Jun 11, 2013
Contact name James Graham Ruby
Organization name Whitehead Institute for Biomedical Research and MIT
Department Biology
Lab Bartel
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL11099
Series (1)
GSE5990 High-throughput sequencing of small RNAs from Caenorhabditis elegans
Relations
BioSample SAMN02195375

Data table header descriptions
SEQUENCE Sequence of small RNA (in DNA)
COUNT Number of times small RNA was sequenced

Data table
SEQUENCE COUNT
GGTCTCGTGGTGTAGTGGTTGTCACATC 1
TCGATTCCCCGCGACGGAACCA 1
GAGAGACCTATACTCCACC 1
ACGTTGCAGTGGGTTA 1
CATCCGTTAATCATGATGTTCGTNCT 1
TAACGTAGATATNTTCAGCT 1
TAGATGTTGTCTCGTTTACCCAT 1
TTCCCCCGAACGCACCA 1
TACGTACTGAATGATCCGTACGAT 1
GGCCAACGTTCTCAACAATGAC 1
TTGGTTCCTCTATTAGAACC 1
TTGCACAATGGGCGCAAGCA 1
CGTCAAAGCTGCATCG 1
TAATCAGGCTAGTTTGTTA 1
CGTCAGATGGACAGGTNTGAAC 1
CCCTATCTGCCGTGGCGCT 2
TGAATGANAATCGATGATAGGTNTC 1
CTAAAGCTAGATTACCAAAGCT 1
GGTCTCGCGTGTAGTGGTTATCACATC 1
CTTATCGGACGTGGGGTTCAAGTCCC 1

Total number of rows: 181668

Table truncated, full table size 4486 Kbytes.




Supplementary data files not provided

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