GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM139137
Query DataSets for GSM139137
Status
Public on Oct 15, 2006
Title
MIT/WI Bartel C.elegans 454 2006
Sample type
SRA
Source name
mixed-stage Caenorhabditis elegans with contaminating Escherichia coli
Organisms
Escherichia coli
;
Caenorhabditis elegans
Characteristics
mixed-stage, wild-type, N2, 20 deg C
Extracted molecule
total RNA
Extraction protocol
total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
other
Instrument model
454 GS
Description
small RNAs
Data processing
extraction of sequences flanked by perfect 9mer matches to the expected adjacent adapter sequences
Submission date
Oct 07, 2006
Last update date
Jun 11, 2013
Contact name
James Graham Ruby
Organization name
Whitehead Institute for Biomedical Research and MIT
Department
Biology
Lab
Bartel
Street address
9 Cambridge Center
City
Cambridge
State/province
MA
ZIP/Postal code
02139
Country
USA
Platform ID
GPL11099
Series (1)
GSE5990
High-throughput sequencing of small RNAs from Caenorhabditis elegans
Relations
BioSample
SAMN02195375
Data table header descriptions
SEQUENCE
Sequence of small RNA (in DNA)
COUNT
Number of times small RNA was sequenced
Data table
SEQUENCE
COUNT
GGTCTCGTGGTGTAGTGGTTGTCACATC
1
TCGATTCCCCGCGACGGAACCA
1
GAGAGACCTATACTCCACC
1
ACGTTGCAGTGGGTTA
1
CATCCGTTAATCATGATGTTCGTNCT
1
TAACGTAGATATNTTCAGCT
1
TAGATGTTGTCTCGTTTACCCAT
1
TTCCCCCGAACGCACCA
1
TACGTACTGAATGATCCGTACGAT
1
GGCCAACGTTCTCAACAATGAC
1
TTGGTTCCTCTATTAGAACC
1
TTGCACAATGGGCGCAAGCA
1
CGTCAAAGCTGCATCG
1
TAATCAGGCTAGTTTGTTA
1
CGTCAGATGGACAGGTNTGAAC
1
CCCTATCTGCCGTGGCGCT
2
TGAATGANAATCGATGATAGGTNTC
1
CTAAAGCTAGATTACCAAAGCT
1
GGTCTCGCGTGTAGTGGTTATCACATC
1
CTTATCGGACGTGGGGTTCAAGTCCC
1
Total number of rows:
181668
Table truncated, full table size
4486 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
External link. Please review our
privacy policy
.