|
| Status |
Public on May 20, 2015 |
| Title |
Fat line chicken 162 |
| Sample type |
genomic |
| |
|
| Source name |
chicken in the fat line
|
| Organism |
Gallus gallus |
| Characteristics |
tissue: blood
gender: Male
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA samples were extracted from the blood using the standard phenol/chloroform method
|
| Label |
biotin
|
| Label protocol |
DNA sample quality was determined by spectrophotometry and agarose gel electrophoresis.
|
| |
|
| Hybridization protocol |
DNA samples were hybridized onto the Illumina chicken 60k SNPchip containing 57,636 SNPs.
|
| Scan protocol |
Genotyping data were generated using BeadStudio (Version 3.2.2) and after quality control procedures, a total of 475 birds and 48,034 SNPs on 28 autosomes and the Z sex chromosome were kept for CNV detection.
|
| Description |
Genomic DNA extracted from blood was genotyped using chicken 60k SNP chip.
|
| Data processing |
Genomic DNA extracted from the blood was genotyped using the Illumina chicken 60k SNPchip and PennCNV software was used to identify chicken CNVs.
|
| |
|
| Submission date |
Jun 16, 2014 |
| Last update date |
May 20, 2015 |
| Contact name |
Hui Zhang |
| E-mail(s) |
8294zhanghui@gmail.com
|
| Organization name |
Northeast Agricultural University
|
| Department |
College of Animal Science and Technology
|
| Street address |
Mucai street No. 59
|
| City |
Harbin |
| State/province |
Heilongjiang |
| ZIP/Postal code |
150030 |
| Country |
China |
| |
|
| Platform ID |
GPL18807 |
| Series (1) |
| GSE58551 |
Detection of genome-wide copy number variations in two chicken lines divergently selected for abdominal fat content |
|
