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Sample GSM1445859 Query DataSets for GSM1445859
Status Public on Dec 26, 2018
Title BGN_KO_rep4
Sample type RNA
 
Source name mouse hypothalamus
Organism Mus musculus
Characteristics background strain: C57BL/6
tissue: hypothalamus
age: 13 weeks
genotype/variation: Bgn_KO
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy Mini Kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
D
Data processing The data were normalised using a robust spline normalization (RSN) with lumi (v2.10.0) in R (v2.15.0).
 
Submission date Jul 24, 2014
Last update date Dec 26, 2018
Contact name Xia Yang
E-mail(s) xyang123@ucla.edu
Organization name UCLA
Street address 610 Charles E. Young Dr. East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (2)
GSE59742 Gene Expression Profile in the Hypothalamus of Male Bgn_KO and WT Mice at 13 Weeks Old
GSE64809 Gene Expressoin Profile in the Hypothalamus and Liver of Male Bgn_KO, FMOD_KO and WT Mice at 13 Weeks Old, With and Without DHA (omega-3) Treatment

Data table header descriptions
ID_REF
VALUE robust spline normalization (RSN)
D.Detection Pval

Data table
ID_REF VALUE D.Detection Pval
ILMN_2896528 5286.061048 0
ILMN_2721178 1181.322444 0
ILMN_3033922 2302.739683 0
ILMN_3092673 9715.683413 0
ILMN_2816356 183.708609 0.04636591
ILMN_2808939 1555.207232 0
ILMN_2634564 440.1708236 0
ILMN_2737647 182.4271051 0.05513784
ILMN_2734484 874.3643615 0
ILMN_2952292 304.8330798 0
ILMN_2699078 158.4646707 0.5451128
ILMN_1213681 452.462283 0
ILMN_2735413 166.4904561 0.2769423
ILMN_2735415 165.4609754 0.2957394
ILMN_2891688 1352.779152 0
ILMN_2637698 2057.75926 0
ILMN_2674228 527.0505274 0
ILMN_2601546 171.2369506 0.1654135
ILMN_1230831 179.6684845 0.0726817
ILMN_2848071 190.6094428 0.02130326

Total number of rows: 25697

Table truncated, full table size 789 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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