NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1445863 Query DataSets for GSM1445863
Status Public on Dec 26, 2018
Title WT_rep2
Sample type RNA
 
Source name mouse hypothalamus
Organism Mus musculus
Characteristics background strain: C57BL/6
tissue: hypothalamus
age: 13 weeks
genotype/variation: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy Mini Kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
F
Data processing The data were normalised using a robust spline normalization (RSN) with lumi (v2.10.0) in R (v2.15.0).
 
Submission date Jul 24, 2014
Last update date Dec 26, 2018
Contact name Xia Yang
E-mail(s) xyang123@ucla.edu
Organization name UCLA
Street address 610 Charles E. Young Dr. East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (2)
GSE59742 Gene Expression Profile in the Hypothalamus of Male Bgn_KO and WT Mice at 13 Weeks Old
GSE64809 Gene Expressoin Profile in the Hypothalamus and Liver of Male Bgn_KO, FMOD_KO and WT Mice at 13 Weeks Old, With and Without DHA (omega-3) Treatment

Data table header descriptions
ID_REF
VALUE robust spline normalization (RSN)
F.Detection Pval

Data table
ID_REF VALUE F.Detection Pval
ILMN_2896528 5543.239 0
ILMN_2721178 1517.244 0
ILMN_3033922 2570.546 0
ILMN_3092673 9695.509 0
ILMN_2816356 186.3911 0.04260652
ILMN_2808939 1624.792 0
ILMN_2634564 403.1228 0
ILMN_2737647 172.0863 0.1516291
ILMN_2734484 1163.073 0
ILMN_2952292 333.1049 0
ILMN_2699078 150.9179 0.8596491
ILMN_1213681 419.9994 0
ILMN_2735413 170.2749 0.1867168
ILMN_2735415 173.3076 0.1403509
ILMN_2891688 1252.58 0
ILMN_2637698 2335.822 0
ILMN_2674228 687.9344 0
ILMN_2601546 171.7229 0.1578947
ILMN_1230831 157.3231 0.5877193
ILMN_2848071 202.083 0.003759399

Total number of rows: 25697

Table truncated, full table size 710 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap