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Sample GSM1445865 Query DataSets for GSM1445865
Status Public on Dec 26, 2018
Title WT_rep3
Sample type RNA
 
Source name mouse hypothalamus
Organism Mus musculus
Characteristics background strain: C57BL/6
tissue: hypothalamus
age: 13 weeks
genotype/variation: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy Mini Kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
G
Data processing The data were normalised using a robust spline normalization (RSN) with lumi (v2.10.0) in R (v2.15.0).
 
Submission date Jul 24, 2014
Last update date Dec 26, 2018
Contact name Xia Yang
E-mail(s) xyang123@ucla.edu
Organization name UCLA
Street address 610 Charles E. Young Dr. East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (2)
GSE59742 Gene Expression Profile in the Hypothalamus of Male Bgn_KO and WT Mice at 13 Weeks Old
GSE64809 Gene Expressoin Profile in the Hypothalamus and Liver of Male Bgn_KO, FMOD_KO and WT Mice at 13 Weeks Old, With and Without DHA (omega-3) Treatment

Data table header descriptions
ID_REF
VALUE robust spline normalization (RSN)
G.Detection Pval

Data table
ID_REF VALUE G.Detection Pval
ILMN_2896528 4738.210877 0
ILMN_2721178 1325.481081 0
ILMN_3033922 2472.25012 0
ILMN_3092673 9479.421713 0
ILMN_2816356 186.6083089 0.03007519
ILMN_2808939 1726.849356 0
ILMN_2634564 422.7448837 0
ILMN_2737647 200.4657552 0.006265664
ILMN_2734484 1037.021598 0
ILMN_2952292 331.1407423 0
ILMN_2699078 146.3859239 0.9561403
ILMN_1213681 429.0112633 0
ILMN_2735413 175.0677236 0.1177945
ILMN_2735415 172.6286133 0.1503759
ILMN_2891688 1379.510241 0
ILMN_2637698 2172.486584 0
ILMN_2674228 616.093661 0
ILMN_2601546 171.1778656 0.1804511
ILMN_1230831 161.606024 0.424812
ILMN_2848071 212.607002 0.001253133

Total number of rows: 25697

Table truncated, full table size 787 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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