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GEO accession:
Sample GSM146363
Query DataSets for GSM146363
Status
Public on Mar 31, 2007
Title
Maythorpe Root Control, biological rep1
Sample type
RNA
Source name
Maythorpe Root
Organism
Hordeum vulgare
Characteristics
Genotype: Maythorpe
Treatment protocol
control root
Growth protocol
hydroponics
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol
GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description
Gene expression data from barley root
Data processing
The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date
Nov 20, 2006
Last update date
Mar 31, 2007
Contact name
Harkamal Walia
Organization name
University of Nebraska
Street address
Agronomy and Horticulture
City
Lincoln
State/province
NE
ZIP/Postal code
68583
Country
USA
Platform ID
GPL1340
Series (1)
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
248.1
P
0.000662
AFFX-BioB-M_at
142.8
P
0.000224
AFFX-BioB-3_at
178.6
P
0.00034
AFFX-BioC-5_at
352
P
0.000146
AFFX-BioC-3_at
379.2
P
0.000044
AFFX-BioDn-5_at
433.7
P
0.000044
AFFX-BioDn-3_at
2496.9
P
0.00006
AFFX-CreX-5_at
4597.8
P
0.000044
AFFX-CreX-3_at
8388.2
P
0.000044
AFFX-DapX-5_at
585.3
P
0.00006
AFFX-DapX-M_at
1310.4
P
0.000081
AFFX-DapX-3_at
2101.6
P
0.000044
AFFX-LysX-5_at
91.8
P
0.000044
AFFX-LysX-M_at
167.1
P
0.003595
AFFX-LysX-3_at
388.8
P
0.00007
AFFX-PheX-5_at
167.8
P
0.000081
AFFX-PheX-M_at
198.1
P
0.000169
AFFX-PheX-3_at
267.2
P
0.00007
AFFX-ThrX-5_at
144.2
P
0.000081
AFFX-ThrX-M_at
296
P
0.000044
Total number of rows:
22840
Table truncated, full table size
703 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM146363.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
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