GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM146786 Query DataSets for GSM146786
Status Public on Nov 23, 2006
Title Stage 1, PT#6, Normal (HG-U133A)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Normal, PT#6, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Normal HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL96
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 759 P 0.002275
AFFX-BioB-M_at 1310.6 P 0.00011
AFFX-BioB-3_at 748.3 P 0.000857
AFFX-BioC-5_at 2216.4 P 0.000127
AFFX-BioC-3_at 1969.5 P 7.00E-05
AFFX-BioDn-5_at 2109.1 P 6.00E-05
AFFX-BioDn-3_at 11258.2 P 4.40E-05
AFFX-CreX-5_at 20412.7 P 4.40E-05
AFFX-CreX-3_at 27130.1 P 4.40E-05
AFFX-DapX-5_at 14.3 A 0.645547
AFFX-DapX-M_at 131.3 A 0.108979
AFFX-DapX-3_at 52.5 A 0.672921
AFFX-LysX-5_at 862.1 P 4.40E-05
AFFX-LysX-M_at 3083.9 P 4.40E-05
AFFX-LysX-3_at 6292.9 P 5.20E-05
AFFX-PheX-5_at 1605.9 P 4.40E-05
AFFX-PheX-M_at 5870.1 P 4.40E-05
AFFX-PheX-3_at 12860.8 P 4.40E-05
AFFX-ThrX-5_at 77.2 A 0.48511
AFFX-ThrX-M_at 141.5 A 0.078002

Total number of rows: 22283

Table truncated, full table size 595 Kbytes.

Supplementary file Size Download File type/resource
GSM146786.CEL.gz 3.2 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap