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Sample GSM146807 Query DataSets for GSM146807
Status Public on Nov 23, 2006
Title Stage 1, PT#6,Tumor (HG-U133B)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Tumor, PT#6, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Tumor HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL97
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 957.5 P 0.001248
AFFX-BioB-M_at 2566 P 8.10E-05
AFFX-BioB-3_at 974.9 P 0.000127
AFFX-BioC-5_at 3321.3 P 7.00E-05
AFFX-BioC-3_at 2648.9 P 6.00E-05
AFFX-BioDn-5_at 2684.5 P 6.00E-05
AFFX-BioDn-3_at 15683.7 P 7.00E-05
AFFX-CreX-5_at 30207.8 P 4.40E-05
AFFX-CreX-3_at 46988.2 P 4.40E-05
AFFX-DapX-5_at 105.7 A 0.123572
AFFX-DapX-M_at 163.2 A 0.095667
AFFX-DapX-3_at 186.3 A 0.195266
AFFX-LysX-5_at 7841.6 P 4.40E-05
AFFX-LysX-M_at 15193.2 P 4.40E-05
AFFX-LysX-3_at 21247.9 P 4.40E-05
AFFX-PheX-5_at 26405.5 P 4.40E-05
AFFX-PheX-M_at 34054.2 P 4.40E-05
AFFX-PheX-3_at 30419.3 P 4.40E-05
AFFX-ThrX-5_at 559.9 P 0.000972
AFFX-ThrX-M_at 902.5 P 9.50E-05

Total number of rows: 22645

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM146807.CEL.gz 3.2 Mb (ftp)(http) CEL

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