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Sample GSM1486553 Query DataSets for GSM1486553
Status Public on Jun 30, 2015
Title EWSR1-NFATc2 tumor, sample RUS2
Sample type RNA
 
Source name EWSR1-NFATc2 tumor
Organism Homo sapiens
Characteristics tissue: EWSR1-NFATc2 tumor
gender: Male
Extracted molecule polyA RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol using 2µg total RNA
 
Hybridization protocol As according to the manufacturer's instructions.
Scan protocol GCOS 1.4
Description Gene expression data of EWSR1-NFATc2 tumor
Data processing All data were normalized using the gcrma package version 2.34.0 in the R 3.0.2 environment (R Development Core Team, 2005) with Brainarray Entrez gene CDF v17 and with quantile normalisation
 
Submission date Aug 25, 2014
Last update date Jun 30, 2015
Contact name Franck Tirode
Organization name Institut Curie
Department Inserm U830
Lab Génétique et biologie des tumeurs pédiatriques
Street address 26 Rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL17811
Series (1)
GSE60740 Expression profiles of Ewing family of tumors authenticate distinct molecular entities

Data table header descriptions
ID_REF
VALUE GCRMA signal intensity (log 2)

Data table
ID_REF VALUE
1_at 5.079548106
10_at 2.062206701
100_at 4.460686197
1000_at 4.610408646
10000_at 4.572235569
100009676_at 2.329945161
10001_at 5.865014503
10002_at 2.439877912
10003_at 3.866137475
10004_at 2.448525957
100048912_at 2.209936486
100049716_at 3.919534773
10005_at 4.238757366
10006_at 9.085543737
10007_at 9.292520982
10008_at 2.718177077
10009_at 7.0388808
100093630_at 8.045295617
100093698_at 2.050391444
1001_at 2.262165468

Total number of rows: 18960

Table truncated, full table size 388 Kbytes.




Supplementary file Size Download File type/resource
GSM1486553_101432-08.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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