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Sample GSM14916 Query DataSets for GSM14916
Status Public on Jan 14, 2004
Title BJ dermal fibroblasts
Sample type SAGE
Anchor NlaIII
Tag Count 57573
Tag Length 10
 
Source name BJ foreskin primary fibroblast cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description BJ neonatal foreskin primary fibroblasts were cultured in Ham's F10 medium supplemented with 10% fetal bovine serum, 100 U/ml penicillin, and 100 ug/ml streptomycin. The population doubling (PD) of cells chosen for SAGE library construction was PD=37. The cells were ~80% confluent at the time of RNA isolation.
 
Submission date Jan 07, 2004
Last update date Nov 19, 2008
Contact name Agnes Baross
E-mail(s) abaross@bcgsc.ca
Phone 604-877-6000/ ext. 3267
Fax 604-877-6085
Organization name British Columbia Cancer Agency
Lab British Columbia Genome Sciences Centre
Street address 600 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 4E6
Country Canada
 
Platform ID GPL4
Series (1)
GSE953 Effect of TERT and ATM on Gene Expression Profiles in Human Fibroblasts

Data table header descriptions
TAG linker sequences are excluded
COUNT duplicate ditags are excluded
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 142 2466.43
AAAAAAAAAC 2 34.74
AAAAAAAAAG 4 69.48
AAAAAAAAAT 2 34.74
AAAAAAAACC 1 17.37
AAAAAAAAGA 2 34.74
AAAAAAAAGG 1 17.37
AAAAAAACAA 1 17.37
AAAAAAAGAA 1 17.37
AAAAAAAGAT 1 17.37
AAAAAAAGGG 1 17.37
AAAAAAATTG 1 17.37
AAAAAAATTT 3 52.11
AAAAAACAAA 1 17.37
AAAAAACCCA 1 17.37
AAAAAACTCA 1 17.37
AAAAAACTCC 2 34.74
AAAAAAGAAA 1 17.37
AAAAAAGAAG 1 17.37
AAAAAAGCAG 1 17.37

Total number of rows: 21839

Table truncated, full table size 407 Kbytes.




Supplementary data files not provided

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