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Sample GSM1515 Query DataSets for GSM1515
Status Public on Mar 26, 2002
Title PC3 Mock
Sample type SAGE
Anchor NlaIII
Tag Count 38819
Tag Length 10
 
Source name PC3
Organism Homo sapiens
Extracted molecule total RNA
 
Description Identification of targets of JNK2 signaling involved in regulation of human tumor cell growth.

PC3 cells, Mock treatment, total number of 40,655 SAGE tags sequenced. 38,819 SAGE tags analyzed after clean-up (extraction of poly(A) tags, linker-generated tags, and tags originated from clones producing 4 tags or less).
 
Submission date Mar 26, 2002
Last update date Nov 19, 2008
Contact name Nikki J. Holbrook
E-mail(s) nikki.holbrook@yale.edu
Phone 203-737-5847
Fax 203-737-1801
Organization name Yale University School of Medicine
Department Department of Internal Medicine
Lab Geriatrics Section
Street address 333 Cedar Street
City New Heaven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL4
Series (1)
GSE508 Targets of c-Jun NH(2)-terminal kinase 2-mediated tumor growth regulation

Data table header descriptions
TAG PC3 Mock
COUNT Cleaned-Up
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAC 1 25.76
AAAAAAAAAG 5 128.80
AAAAAAAAAT 1 25.76
AAAAAAAAGA 4 103.04
AAAAAAAATA 2 51.52
AAAAAAACAG 1 25.76
AAAAAAACCA 1 25.76
AAAAAAACTA 1 25.76
AAAAAAAGAA 1 25.76
AAAAAAAGCA 1 25.76
AAAAAACATC 1 25.76
AAAAAACCCA 7 180.32
AAAAAACTCC 6 154.56
AAAAAAGTTC 1 25.76
AAAAAATAAA 1 25.76
AAAAAATGCT 1 25.76
AAAAAATTTG 1 25.76
AAAAACAACC 1 25.76
AAAAACATTT 1 25.76
AAAAACCAAA 1 25.76

Total number of rows: 15961

Table truncated, full table size 298 Kbytes.




Supplementary data files not provided

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