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Sample GSM151958 Query DataSets for GSM151958
Status Public on Jan 01, 2007
Title Placenta Control
Sample type RNA
 
Source name placenta
Organism Homo sapiens
Characteristics placenta tissue. RNA was pooled from 10 patients with uneventfull pregnancy
Extracted molecule total RNA
Extraction protocol RNA was extracted from the placental tissue using Qiagen RNeasy mini kit including DNase kit using standard protocol
Label biotin
Label protocol 20 µg RNA were transcribed in double-stranded cDNA by cDNA Synthesis System (Roche Diagnostics GmbH, Mannheim, Germany). cRNA was produced by MEGAscript TM High Yield Transcription Kit (Ambion, Austin, USA) and labelled with biotin-11-CTP and biotin-16-UTP nucleotides (Perkin Elmer Life Sciences, Boston, USA).
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Preeclampsia complicates more than 3% of all pregnancies in the United States and Europe. High-risk populations include women with diabetes, dyslipidemia, thrombotic disorders, hyperhomocysteinemia, hypertension, renal diseases, previous preeclampsia, twin pregnancies, and low socioeconomic status. In the latter case, the incidence may increase to 20% to 25%. Preeclampsia is a major cause of maternal and fetal morbidity and mortality. Preeclampsia is defined by systolic blood pressure of more than 140 mm Hg and diastolic blood pressure of more than 90 mm Hg after 20 weeks gestation in a previously normotensive patient, and new-onset proteinuria. Abnormal placentation associated with shallow trophoblast invasion (fetal cells from outer cell layer of the blastocyst) into endometrium (decidua) and improper spiral artery remodeling in the decidua are initial pathological steps.
Data processing GCOS
 
Submission date Dec 20, 2006
Last update date Aug 28, 2018
Contact name Florian Herse
E-mail(s) florian.herse@charite.de
Organization name Charite
Street address Wiltbergstr. 50
City Berlin
ZIP/Postal code 13125
Country Germany
 
Platform ID GPL570
Series (1)
GSE6573 Dysregulation of the circulating and tissue-based renin-angiotensin system in preeclampsia
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-3_at 212.4 P 0.000446
AFFX-BioC-5_at 621.9 P 0.000044
AFFX-BioC-3_at 788.0 P 0.000044
AFFX-BioDn-5_at 1559.3 P 0.000044
AFFX-BioDn-3_at 4146.9 P 0.000070
AFFX-CreX-5_at 7753.1 P 0.000044
AFFX-CreX-3_at 10092.7 P 0.000044
AFFX-DapX-5_at 1.4 A 0.659339
AFFX-DapX-M_at 9.3 A 0.425962
AFFX-DapX-3_at 2.5 A 0.876428
AFFX-LysX-5_at 8.9 A 0.131361
AFFX-LysX-M_at 5.1 A 0.686292
AFFX-LysX-3_at 4.5 A 0.382599
AFFX-PheX-5_at 5.2 A 0.411380
AFFX-PheX-M_at 1.1 A 0.904333
AFFX-PheX-3_at 3.8 A 0.891021
AFFX-ThrX-5_at 6.6 A 0.631562
AFFX-ThrX-M_at 12.6 A 0.185131
AFFX-ThrX-3_at 6.9 A 0.574038
AFFX-TrpnX-5_at 8.9 A 0.485110

Total number of rows: 54673

Table truncated, full table size 1443 Kbytes.




Supplementary file Size Download File type/resource
GSM151958.CEL.gz 8.3 Mb (ftp)(http) CEL

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