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Sample GSM1525296 Query DataSets for GSM1525296
Status Public on Mar 31, 2016
Title CP73
Sample type RNA
 
Source name breast cancer tumor
Organism Homo sapiens
Characteristics tumor size: T3
lymph node status: neg
grade: III
response: PR
tissue: breast cancer tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol According to whole genome DASL assay (Illumina)
 
Hybridization protocol Standard Illumina DASL hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were processed and normalised using quantile normalisation with BeadStudio software
 
Submission date Oct 14, 2014
Last update date Mar 31, 2016
Contact name Loris De Cecco
E-mail(s) loris.dececco@istitutotumori.mi.it
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL14951
Series (1)
GSE62327 Gene expression profiling of primary HER2-positive breast cancers treated with neoadjuvant trastuzumab

Data table header descriptions
ID_REF
VALUE quantile normalized signal
9440308065_G.Detection Pval

Data table
ID_REF VALUE 9440308065_G.Detection Pval
ILMN_1762337 2632.882 0
ILMN_2055271 293.1436 0.003448276
ILMN_2383229 19.08556 0.8482758
ILMN_1806310 23.94988 0.5862069
ILMN_1779670 39.62779 0.1241379
ILMN_1717783 16.26528 0.9758621
ILMN_1814316 261.9452 0.003448276
ILMN_2359168 232.9769 0.003448276
ILMN_1731507 16.16416 0.9758621
ILMN_1787689 29.55668 0.3172414
ILMN_3241953 1482.85 0
ILMN_1745607 13445.78 0
ILMN_2136495 81.07453 0.02068966
ILMN_1668111 36.29668 0.1655172
ILMN_2295559 25.25002 0.5206897
ILMN_1735045 2856.046 0
ILMN_1680754 45.0847 0.07586207
ILMN_2375184 152.1224 0.006896552
ILMN_1659452 209.4643 0.003448276
ILMN_1767388 729.4509 0

Total number of rows: 29377

Table truncated, full table size 813 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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