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Sample GSM1525297 Query DataSets for GSM1525297
Status Public on Mar 31, 2016
Title CP89
Sample type RNA
 
Source name breast cancer tumor
Organism Homo sapiens
Characteristics tumor size: T3
lymph node status: neg
grade: III
response: PR
tissue: breast cancer tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol According to whole genome DASL assay (Illumina)
 
Hybridization protocol Standard Illumina DASL hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were processed and normalised using quantile normalisation with BeadStudio software
 
Submission date Oct 14, 2014
Last update date Mar 31, 2016
Contact name Loris De Cecco
E-mail(s) loris.dececco@istitutotumori.mi.it
Organization name IRCSS Istituto Nazionale Tumori
Street address via Venezian 1
City Milan
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL14951
Series (1)
GSE62327 Gene expression profiling of primary HER2-positive breast cancers treated with neoadjuvant trastuzumab

Data table header descriptions
ID_REF
VALUE quantile normalized signal
9440308065_J.Detection Pval

Data table
ID_REF VALUE 9440308065_J.Detection Pval
ILMN_1762337 1278.259 0
ILMN_2055271 65.98976 0.003448276
ILMN_2383229 26.35375 0.1551724
ILMN_1806310 36.54818 0.05862069
ILMN_1779670 21.80682 0.3793103
ILMN_1717783 63.16911 0.003448276
ILMN_1814316 39.96848 0.04137931
ILMN_2359168 38.05025 0.04827586
ILMN_1731507 17.58313 0.8206897
ILMN_1787689 27.7578 0.1310345
ILMN_3241953 256.1199 0
ILMN_1745607 6880.096 0
ILMN_2136495 249.3222 0
ILMN_1668111 25.52803 0.1793104
ILMN_2295559 26.09703 0.162069
ILMN_1735045 269.3317 0
ILMN_1680754 31.68938 0.08965518
ILMN_2375184 26.89056 0.1517241
ILMN_1659452 36.45803 0.05862069
ILMN_1767388 65.26324 0.003448276

Total number of rows: 29377

Table truncated, full table size 758 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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