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Sample GSM154731 Query DataSets for GSM154731
Status Public on May 01, 2008
Title Anterior Thalamus Replicate 2
Sample type RNA
 
Source name Adult brain
Organism Macaca mulatta
Characteristics Material from adult monkey dorsal thalamus
Extracted molecule total RNA
Extraction protocol Triazol (Invitrogen, Carlsbad, CA) regent followed by RNeasy (Qiagen, Valencia, CA) lipid mini kit cleanup
Label biotin
Label protocol Affymetrix recomended labelling protocol was used.
 
Hybridization protocol Affymetrix recomended hybridization protocol was used.
Scan protocol U133A GeneChips were scanned using a Affymetrix GeneChip Scanner 7G according to the manufactureres instructions.
Description None
Data processing Raw values obtained from Affymetrix Cel files were preprocessed for RMA in GeneSpring GX (version 7.3.1) followed by per-gene and per-chip median polishing.
 
Submission date Jan 10, 2007
Last update date May 01, 2008
Contact name Karl Daniel Murray
E-mail(s) kdmurray@ucdavis.edu
Organization name UC Davis
Street address 1544 Newton Court
City Davis
State/province CA
ZIP/Postal code 95618
Country USA
 
Platform ID GPL96
Series (1)
GSE6708 Nucleus- and cell-specific gene expression in monkey thalamus

Data table header descriptions
ID_REF
VALUE RMA Preprocessed

Data table
ID_REF VALUE
AFFX-BioB-5_at 329.91052
AFFX-BioB-M_at 411.72992
AFFX-BioB-3_at 223.85101
AFFX-BioC-5_at 854.27094
AFFX-BioC-3_at 698.4525
AFFX-BioDn-5_at 1888.952
AFFX-BioDn-3_at 4681.7285
AFFX-CreX-5_at 8762.567
AFFX-CreX-3_at 11813.823
AFFX-DapX-5_at 17.54267
AFFX-DapX-M_at 15.743675
AFFX-DapX-3_at 17.880793
AFFX-LysX-5_at 14.325097
AFFX-LysX-M_at 30.300676
AFFX-LysX-3_at 16.454432
AFFX-PheX-5_at 21.84456
AFFX-PheX-M_at 16.63134
AFFX-PheX-3_at 58.939156
AFFX-ThrX-5_at 24.38855
AFFX-ThrX-M_at 19.44746

Total number of rows: 22283

Table truncated, full table size 448 Kbytes.




Supplementary file Size Download File type/resource
GSM154731.CEL.gz 3.0 Mb (ftp)(http) CEL

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