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Sample GSM154741 Query DataSets for GSM154741
Status Public on May 01, 2008
Title Pulvinar Replicate 2
Sample type RNA
 
Source name Adult brain
Organism Macaca mulatta
Characteristics Material from adult monkey dorsal thalamus
Extracted molecule total RNA
Extraction protocol Triazol (Invitrogen, Carlsbad, CA) regent followed by RNeasy (Qiagen, Valencia, CA) lipid mini kit cleanup
Label biotin
Label protocol Affymetrix recomended labelling protocol was used.
 
Hybridization protocol Affymetrix recomended hybridization protocol was used.
Scan protocol U133A GeneChips were scanned using a Affymetrix GeneChip Scanner 7G according to the manufactureres instructions.
Description None
Data processing Raw values obtained from Affymetrix Cel files were preprocessed for RMA in GeneSpring GX (version 7.3.1) followed by per-gene and per-chip median polishing.
 
Submission date Jan 10, 2007
Last update date May 01, 2008
Contact name Karl Daniel Murray
E-mail(s) kdmurray@ucdavis.edu
Organization name UC Davis
Street address 1544 Newton Court
City Davis
State/province CA
ZIP/Postal code 95618
Country USA
 
Platform ID GPL96
Series (1)
GSE6708 Nucleus- and cell-specific gene expression in monkey thalamus

Data table header descriptions
ID_REF
VALUE RMA Preprocessed

Data table
ID_REF VALUE
AFFX-BioB-5_at 363.8464
AFFX-BioB-M_at 401.4241
AFFX-BioB-3_at 261.79147
AFFX-BioC-5_at 883.4734
AFFX-BioC-3_at 738.0173
AFFX-BioDn-5_at 2134.185
AFFX-BioDn-3_at 4074.5176
AFFX-CreX-5_at 8449.652
AFFX-CreX-3_at 11773.243
AFFX-DapX-5_at 17.911432
AFFX-DapX-M_at 16.33642
AFFX-DapX-3_at 18.15658
AFFX-LysX-5_at 14.887586
AFFX-LysX-M_at 30.756966
AFFX-LysX-3_at 15.874776
AFFX-PheX-5_at 20.206394
AFFX-PheX-M_at 16.31887
AFFX-PheX-3_at 65.432076
AFFX-ThrX-5_at 19.672773
AFFX-ThrX-M_at 16.304466

Total number of rows: 22283

Table truncated, full table size 448 Kbytes.




Supplementary file Size Download File type/resource
GSM154741.CEL.gz 3.0 Mb (ftp)(http) CEL

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