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Sample GSM155816 Query DataSets for GSM155816
Status Public on Jan 24, 2007
Title HeLa/16E6 Cells: Wild-type vs. Mutant E2 infection (Replicate 1)
Sample type RNA
 
Channel 1
Source name REF
Organism Homo sapiens
Characteristics HeLa/16E6 Cells - Mutant E2 Infected
Extracted molecule total RNA
Extraction protocol Total RNA prepared with Qiagen RNeasy Kit
Label CY3
Label protocol Cy3 and Cy5 amino-allyl labeled cDNA probes
 
Channel 2
Source name EXP
Organism Homo sapiens
Characteristics HeLa/16E6 Cells - Wild-type E2 Infected
Extracted molecule total RNA
Extraction protocol Total RNA prepared with Qiagen RNeasy Kit
Label CY5
Label protocol Cy3 and Cy5 amino-allyl labeled cDNA probes
 
 
Hybridization protocol Oligo array hybridization in Gene Machines hybridization chamber
Scan protocol Axon GenePix 4000A Scanner
Description Senescent HeLa/16E6 Cells compared to proliferating HeLa/16E6 Cells
Data processing Data processing VALUE is log2 (CY5/CY3; exp/ref)
 
Submission date Jan 17, 2007
Last update date Jan 24, 2007
Contact name Kimberly Johung
E-mail(s) kimberly.johung@yale.edu
Organization name Yale University School of Medicine
Department Genetics
Lab Daniel DiMaio
Street address 333 Cedar Street
City New Haven
State/province CT
ZIP/Postal code 06510
Country USA
 
Platform ID GPL4693
Series (2)
GSE6759 HeLa/16E6 Cells (Wild-type E2-infected vs. Mutant E2-infected)
GSE6805 Induced Senescence in HeLa Cells

Data table header descriptions
ID_REF Identifier reference
VALUE log2 (CY5/CY3; exp/ref)
CH1I_MEDIAN F532 Median: median feature pixel intensity at wavelength (532 nm)
CH1B_MEDIAN B532 Median: median feature background intensity at wavelength (532 nm)
CH2I_MEDIAN F635 Median: median feature pixel intensity at wavelength (635 nm)
CH2B_MEDIAN B635 Median: median feature background intensity at wavelength (635 nm)

Data table
ID_REF VALUE CH1I_MEDIAN CH1B_MEDIAN CH2I_MEDIAN CH2B_MEDIAN
1a1b1c -0.723 618 214 331 86
1a2b1c 0.000 655 217 524 86
1a3b1c -0.142 437 214 288 86
1a4b1c -1.158 344 210 146 86
1a5b1c -0.502 576 216 341 87
1a6b1c 1.247 2843 220 6316 88
1a7b1c 0.503 406 219 359 94
1a8b1c 1.332 3304 222 7852 96
1a9b1c -1.411 365 224 148 95
1a10b1c 0.339 624 224 599 93
1a11b1c -0.697 448 226 231 94
1a12b1c -1.685 381 230 144 97
1a13b1c -0.963 668 233 322 99
1a14b1c -2.083 377 229 132 97
1a15b1c -0.839 657 226 338 97
1a16b1c -2.286 356 229 122 96
1a17b1c -0.014 747 231 605 94
1a18b1c 0.227 811 228 774 92
1a19b1c -0.881 516 227 248 91
1a20b1c -0.193 440 224 278 89

Total number of rows: 15041

Table truncated, full table size 455 Kbytes.




Supplementary file Size Download File type/resource
GSM155816.gpr.gz 2.2 Mb (ftp)(http) GPR

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