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Sample GSM155818 Query DataSets for GSM155818
Status Public on Jan 24, 2007
Title HeLa/16E6 Cells: Wild-type vs. Mutant E2 infection (Replicate 3)
Sample type RNA
 
Channel 1
Source name REF
Organism Homo sapiens
Characteristics HeLa/16E6 Cells - Mutant E2 Infected
Extracted molecule total RNA
Extraction protocol Total RNA prepared with Qiagen RNeasy Kit
Label CY3
Label protocol Cy3 and Cy5 amino-allyl labeled cDNA probes
 
Channel 2
Source name EXP
Organism Homo sapiens
Characteristics HeLa/16E6 Cells - Wild-type E2 Infected
Extracted molecule total RNA
Extraction protocol Total RNA prepared with Qiagen RNeasy Kit
Label CY5
Label protocol Cy3 and Cy5 amino-allyl labeled cDNA probes
 
 
Hybridization protocol Oligo array hybridization in Gene Machines hybridization chamber
Scan protocol Axon GenePix 4000A Scanner
Description Senescent HeLa/16E6 Cells compared to proliferating HeLa/16E6 Cells
Data processing Data processing VALUE is log2 (CY5/CY3; exp/ref)
 
Submission date Jan 17, 2007
Last update date Jan 24, 2007
Contact name Kimberly Johung
E-mail(s) kimberly.johung@yale.edu
Organization name Yale University School of Medicine
Department Genetics
Lab Daniel DiMaio
Street address 333 Cedar Street
City New Haven
State/province CT
ZIP/Postal code 06510
Country USA
 
Platform ID GPL4693
Series (2)
GSE6759 HeLa/16E6 Cells (Wild-type E2-infected vs. Mutant E2-infected)
GSE6805 Induced Senescence in HeLa Cells

Data table header descriptions
ID_REF Identifier reference
VALUE log2 (CY5/CY3; exp/ref)
CH1I_MEDIAN F532 Median: median feature pixel intensity at wavelength (532 nm)
CH1B_MEDIAN B532 Median: median feature background intensity at wavelength (532 nm)
CH2I_MEDIAN F635 Median: median feature pixel intensity at wavelength (635 nm)
CH2B_MEDIAN B635 Median: median feature background intensity at wavelength (635 nm)

Data table
ID_REF VALUE CH1I_MEDIAN CH1B_MEDIAN CH2I_MEDIAN CH2B_MEDIAN
1a1b1c -0.454 663 99 486 74
1a2b1c 0.151 627 98 660 73
1a3b1c 0.195 456 98 483 73
1a5b1c 0.817 713 99 1154 72
1a6b1c 0.672 3576 101 5605 71
1a7b1c 0.167 995 102 1073 70
1a8b1c 1.029 3677 102 7363 71
1a9b1c -0.791 293 101 182 71
1a10b1c 0.470 345 98 415 73
1a11b1c 0.100 305 97 295 72
1a13b1c -1.142 503 97 255 71
1a15b1c -0.417 469 95 353 73
1a17b1c 0.064 566 97 562 72
1a18b1c 0.387 692 97 850 72
1a19b1c -0.405 308 96 233 73
1a21b1c -1.245 2198 98 960 74
1a22b1c 0.171 771 97 831 72
1a23b1c -0.131 644 95 574 73
1a1b2c -0.454 321 99 236 74
1a4b2c -0.057 1728 96 1639 70

Total number of rows: 11793

Table truncated, full table size 344 Kbytes.




Supplementary file Size Download File type/resource
GSM155818.gpr.gz 2.1 Mb (ftp)(http) GPR

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