NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1580849 Query DataSets for GSM1580849
Status Public on Dec 26, 2018
Title WT_L_rep4
Sample type RNA
 
Source name WT_liver
Organism Mus musculus
Characteristics strain background: C57BL/6
gender: male
genotype/variation: wild type
age: 13 weeks
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy Mini Kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description D
Data processing The data were normalised using a robust spline normalization (RSN) with lumi (v2.10.0) in R (v2.15.0)
 
Submission date Jan 09, 2015
Last update date Dec 26, 2018
Contact name Xia Yang
E-mail(s) xyang123@ucla.edu
Organization name UCLA
Street address 610 Charles E. Young Dr. East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (2)
GSE64806 Gene Expressoin Profile in the Liver of Male WT and BGN_KO Mice at 13 Weeks Old
GSE64809 Gene Expressoin Profile in the Hypothalamus and Liver of Male Bgn_KO, FMOD_KO and WT Mice at 13 Weeks Old, With and Without DHA (omega-3) Treatment

Data table header descriptions
ID_REF
VALUE robust spline normalization (RSN)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4003.758 0
ILMN_2721178 904.204 0
ILMN_3033922 847.2573 0
ILMN_3092673 10013.46 0
ILMN_2816356 152.1943 0.1528822
ILMN_2808939 1412.591 0
ILMN_2634564 949.9966 0
ILMN_2737647 145.2513 0.3195489
ILMN_2734484 507.73 0
ILMN_2952292 202.2427 0
ILMN_2699078 132.6488 0.8258145
ILMN_1213681 608.3434 0
ILMN_2735413 868.1983 0
ILMN_2735415 1137.147 0
ILMN_2891688 984.6778 0
ILMN_2637698 908.3339 0
ILMN_2674228 318.5875 0
ILMN_2601546 142.6138 0.4097744
ILMN_1230831 143.2275 0.3884712
ILMN_2848071 3091.09 0

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap