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Sample GSM1580853 Query DataSets for GSM1580853
Status Public on Dec 26, 2018
Title BGN_L_rep4
Sample type RNA
 
Source name BGN-KO_liver
Organism Mus musculus
Characteristics strain background: C57BL/6
gender: male
genotype/variation: BGN knockout
age: 13 weeks
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy Mini Kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description H
Data processing The data were normalised using a robust spline normalization (RSN) with lumi (v2.10.0) in R (v2.15.0)
 
Submission date Jan 09, 2015
Last update date Dec 26, 2018
Contact name Xia Yang
E-mail(s) xyang123@ucla.edu
Organization name UCLA
Street address 610 Charles E. Young Dr. East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (2)
GSE64806 Gene Expressoin Profile in the Liver of Male WT and BGN_KO Mice at 13 Weeks Old
GSE64809 Gene Expressoin Profile in the Hypothalamus and Liver of Male Bgn_KO, FMOD_KO and WT Mice at 13 Weeks Old, With and Without DHA (omega-3) Treatment

Data table header descriptions
ID_REF
VALUE robust spline normalization (RSN)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 4488.344051 0
ILMN_2721178 1320.728009 0
ILMN_3033922 1832.639649 0
ILMN_3092673 8543.328561 0
ILMN_2816356 188.4726145 0.00877193
ILMN_2808939 1749.018146 0
ILMN_2634564 819.0062399 0
ILMN_2737647 142.075482 0.4423559
ILMN_2734484 832.742824 0
ILMN_2952292 270.5087005 0
ILMN_2699078 134.2296186 0.7756892
ILMN_1213681 486.6010863 0
ILMN_2735413 1125.821763 0
ILMN_2735415 1471.134987 0
ILMN_2891688 964.185581 0
ILMN_2637698 1075.009165 0
ILMN_2674228 418.8376849 0
ILMN_2601546 151.4731752 0.1704261
ILMN_1230831 124.4751085 0.9824561
ILMN_2848071 2653.756993 0

Total number of rows: 25697

Table truncated, full table size 812 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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