|
Status |
Public on May 27, 2016 |
Title |
WGS analysis of ganglionic eminence neural stem and progenitor cells from HuFNSC02 (A22981) |
Sample type |
SRA |
|
|
Source name |
A22981-1
|
Organism |
Homo sapiens |
Characteristics |
submitted sample id: JOC163-2-DNA donor_id: HuFNSC02 Sex: female body site: Brain histological type: Ganglionic eminence neurosphere culture is tumor: No biomaterial_type: primary cell culture cell type: ganglionic eminence neural stem and progenitor cells
|
Extracted molecule |
genomic DNA |
Extraction protocol |
library construction protocol: Refer to document 'SLX-PET Protocol for Illumina Sample Prep' from BC at the Roadmap Epigenomics Project site, Experimental Protocols page (URL: http://www.roadmapepigenomics.org/protocols/type/experimental/)
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|
|
Library strategy |
WGS |
Library source |
genomic |
Library selection |
RANDOM |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
design description: WGS analysis of ganglionic eminence neural stem and progenitor cells from HuFNSC02 (A22981) using Illumina HiSeq 2000 library name: A22981 EXPERIMENT_TYPE: Whole Genome Sequencing EXTRACTION_PROTOCOL: Refer to document 'SLX-PET Protocol for Illumina Sample Prep' from BC at the Roadmap Epigenomics Project site, Experimental Protocols page (URL: http://www.roadmapepigenomics.org/protocols/type/experimental/) EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Covaris-E210 EXTRACTION_PROTOCOL_SONICATION_CYCLES: 0.75 min **************** For data usage terms and conditions, please refer to: http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies ****************
|
Data processing |
Various levels of processed data files will be made available as this project proceeds.
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|
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Submission date |
Jan 12, 2015 |
Last update date |
May 15, 2019 |
Contact name |
UCSF-UBC CENTER |
Organization name |
UCSF-UBC
|
Street address |
UCSF-UBC
|
City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94143 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE16368 |
UCSF-UBC Human Reference Epigenome Mapping Project |
|
Relations |
SRA |
SRX1158106 |
BioSample |
SAMN03416737 |