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Sample GSM1582742 Query DataSets for GSM1582742
Status Public on Oct 01, 2015
Title BE tumor from patient 4 BE tumor Pt4-3
Sample type RNA
 
Source name Transformed Barett's esophagus stem cells
Organism Homo sapiens
Characteristics sample type: Cultured stem cells transformed with hTERT, SV40 and c-myc
cell type: Barett's esophagus stem cells
Treatment protocol Stem cells were transformed with retroviral infection of hTERT, SV40 and c-myc and then subcutaneously transplanted into highly immunocompromised NSG (NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ) mice.
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen)
Label Biotin
Label protocol 3' IVT PLUS Kit (affymetrix)
 
Hybridization protocol GeneChip® Hybridization, Wash, and Stain Kit (affymetrix)
Scan protocol GeneChip® Hybridization, Wash, and Stain Kit (affymetrix)
Description Gene expression data from xenografted tumor
Barett's esophagus stem cells
Data processing Expression console, Partek Genome Suite 6.6
 
Submission date Jan 12, 2015
Last update date Oct 01, 2015
Contact name Frank McKeon
E-mail(s) mckeon.xian@gmail.com
Phone 8608372486
Organization name University of Houston
Department Biology and Biochemistry
Street address 3455 Cullen Blvd
City Houston
State/province TX
ZIP/Postal code 77004
Country USA
 
Platform ID GPL570
Series (1)
GSE64894 Transformation of Barrett's esophagus stem cell, gastric cardia stem cells and normal esophagus stem cells

Data table header descriptions
ID_REF
VALUE signal intensity (log2 value) RMA

Data table
ID_REF VALUE
1007_s_at 10.6447
1053_at 8.62959
117_at 4.93159
121_at 7.80058
1255_g_at 3.30672
1294_at 6.60893
1316_at 6.81447
1320_at 4.71405
1405_i_at 4.49751
1431_at 3.68064
1438_at 5.66419
1487_at 8.64575
1494_f_at 5.33208
1552256_a_at 8.8515
1552257_a_at 9.82565
1552258_at 4.90764
1552261_at 4.40862
1552263_at 5.26494
1552264_a_at 8.08637
1552266_at 3.01874

Total number of rows: 54675

Table truncated, full table size 998 Kbytes.




Supplementary file Size Download File type/resource
GSM1582742_BE_tumor_Pt4-3.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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