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Sample GSM1592704 Query DataSets for GSM1592704
Status Public on May 08, 2015
Title V6-5-L1
Sample type RNA
 
Source name Mu3
Organism Staphylococcus aureus
Characteristics genotype: rpoC mutation (P440L,F652L)
mic_van: 4
Extracted molecule total RNA
Extraction protocol See reference:Neoh HM, et al.: Mutated response regulator graR is responsible for phenotypic conversion of Staphylococcus aureus from heterogeneous vancomycin-intermediate resistance to vancomycin-intermediate resistance. Antimicrob Agents Chemother. 2008 Jan;52(1):45-53.
Label Cy3
Label protocol SuperScript Indirect cDNA Labeling System (Invitrogen Life Technologies, Carlsbad, California).
 
Hybridization protocol Labeled samples were hybridized onto the microarray at 50°C for 16-20 hr. After hybridization, the arrays were washed in the following buffers, and dry by spin slide. 2X SSC/0.05% SDS, for 15 min 0.2X SSC/0.05% SDS, for 15 min 0.5X SSC, for 3 min 0.2X SSC, for 3 min
Scan protocol Nimblegen MS200
Data processing Software: NimbleScan Algorithm: Robust Multi-Array Analysis (Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Biostatistics. 2003 Apr;4(2):249-64 (PMID 12925520)). Normalize: global normalization
 
Submission date Jan 27, 2015
Last update date May 08, 2015
Contact name tomomi hishinuma
Organization name juntendo university
Street address 2-1-1,Hongo
City Bunkyo-Ku
State/province Tokyo
ZIP/Postal code 113-8421
Country Japan
 
Platform ID GPL16176
Series (1)
GSE65338 A mutation of RNA polymerase β’ subunit (RpoC) converts heterogeneously vancomycin-intermediate S. aureus (hVISA) into ‘slow-VISA’ (sVISA)

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
1 8167
2 11405
3 5531
4 6561
5 11318
6 14216
7 1740
8 466
9 6383
10 1057
11 1492
12 6049
13 12616
14 8042
15 7979
16 1889
17 10227
18 13283
19 8296
20 13828

Total number of rows: 3846

Table truncated, full table size 34 Kbytes.




Supplementary file Size Download File type/resource
GSM1592704_140514_V6-5L1.txt.gz 33.0 Kb (ftp)(http) TXT
GSM1592704_1_2014-05-14_532_424412.pair.gz 2.7 Mb (ftp)(http) PAIR
Processed data included within Sample table
Processed data provided as supplementary file

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