|
Status |
Public on Oct 01, 2015 |
Title |
M3O-lenti-iPSCs-LIF(-) A |
Sample type |
RNA |
|
|
Source name |
Cell Line
|
Organism |
Mus musculus |
Characteristics |
cell type: iPSCs leukemia inhibitory factor (lif) treatment: -
|
Treatment protocol |
LIF was omitted during establishment and maintenance of M3O-lenti-iPSCs-LIF(–).
|
Growth protocol |
ESCs and iPSCs-LIF(+) were cultured on irradiated MEF feeder cells in iPSC medium (DMEM, 20% FBS or KnockOut Serum Replacement [Life Technologies], 100 µM MEM non-essential amino acids, 100 µM 2-mercaptoethanol, and 2 mM L-glutamine with or without 1,000 U/ml LIF)
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was prepared from each cell type with a PureLink RNA Mini Kit (Life Technologies).
|
Label |
biotin
|
Label protocol |
Samples with an RNA Integrity Number of 7.5 or greater measured with a LabChip Caliper GX (Perkin Elmer) were applied to an Illumina TotalPrep-96 RNA Amplification Kit (Life Technologies) to generate biotinylated and amplified RNA.
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
Sample name: M6
|
Data processing |
The obtained data were analyzed with an Illumina Genome Studio. The data were normalized using rank invariant method.
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|
|
Submission date |
Feb 03, 2015 |
Last update date |
Oct 01, 2015 |
Contact name |
Nobuaki Kikyo, Hiroyuki Hirai |
E-mail(s) |
kikyo001@umn.edu, hiraih@umich.edu
|
Organization name |
University of Minnesota
|
Department |
Genetics, Cell Biology and Development
|
Street address |
2001 6th St SE
|
City |
Minneapolis |
State/province |
MN |
ZIP/Postal code |
55455 |
Country |
USA |
|
|
Platform ID |
GPL6887 |
Series (2) |
GSE65563 |
Genome-wide identification and analysis of mRNA expression in MEFs, ESCs, and iPSCs |
GSE65597 |
Genome-wide identification and analysis of mRNA and miRNA expression in MEFs, ESCs, and iPSCs |
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