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Sample GSM160397 Query DataSets for GSM160397
Status Public on Jan 01, 2008
Title Prostate tumor patient 57 (HG-U133A 2.0 Array)
Sample type RNA
 
Source name Adenocarcinoma (NOS) of the prostate
Organism Homo sapiens
Characteristics race: African American
smoking status: Past
gleason sum: 7
pt stage: 2
extraprostatic extension: None
perineural invasion: No
seminal vesicle invasion: No
are surgical margins involved: All surgical margins are free of tumor
angio lymphatic invasion: No
Extracted molecule total RNA
Extraction protocol TRIzol
Label biotin
Label protocol Standard Affy protocol
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Race: African American, Smoking Status: Past, Gleason Sum: 7, PT Stage: 2, Extraprostatic Extension: None, Perineural Invasion: No, Seminal vesicle invasion: No, Are Surgical margins involved: All surgical margins are free of tumor, Angio lymphatic invasion: No
Data processing MAS5
 
Submission date Feb 05, 2007
Last update date Apr 16, 2015
Contact name Robert Scott Hudson
Organization name NIH
Department NCI
Lab The Laboratory of Human Carcinogenesis
Street address National Cancer Institute Room Blgd.37/3044
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL571
Series (2)
GSE6956 Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men
GSE7055 Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer

Data table header descriptions
ID_REF Affy ID
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 1762.803289 P
1053_at 207.7820388 P
117_at 128.7654675 P
121_at 391.1389394 P
1255_g_at 2.91098448 A
1294_at 355.6081035 P
1316_at 63.25769217 P
1320_at 75.5012912 A
1405_i_at 737.0724762 P
1431_at 36.28997698 P
1438_at 284.740358 P
1487_at 315.6853824 P
1494_f_at 76.98756046 P
1598_g_at 1349.368254 P
160020_at 253.0609649 P
1729_at 741.2961012 P
1773_at 144.0596075 P
177_at 37.13953147 P
179_at 297.6955894 A
1861_at 329.5616955 P

Total number of rows: 22277

Table truncated, full table size 540 Kbytes.




Supplementary file Size Download File type/resource
GSM160397.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table
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