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 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 14, 2007 |
| Title |
SKNMC_shEF1_rep2 |
| Sample type |
RNA |
| |
|
| Source name |
Ewing SK-N-MC cell line
|
| Organism |
Homo sapiens |
| Characteristics |
Ewing tumor cell line
|
| Growth protocol |
Treated with shRNA lentivirus directed against EWS/FLI-1 for 3 days
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNAs were isolated using the Trizol Reagent
|
| Label |
biotin
|
| Label protocol |
According to Affymetrix Gene-Chip expression analysis technical manual, Affymetrix, Santa Clara, Calif.
|
| |
|
| Hybridization protocol |
According to Affymetrix Gene-Chip expression analysis technical manual, Affymetrix, Santa Clara, Calif.
|
| Scan protocol |
According to Affymetrix Gene-Chip expression analysis technical manual, Affymetrix, Santa Clara, Calif.
|
| Description |
Ewing SK-N-MC cell line treated with shRNA lentivirus directed against EWS/FLI-1 for 3 days
|
| Data processing |
MAS5
|
| |
|
| Submission date |
Feb 10, 2007 |
| Last update date |
Sep 01, 2016 |
| Contact name |
Olivier Delattre |
| E-mail(s) |
olivier.delattre@curie.fr
|
| Phone |
33142346681
|
| Fax |
33142646630
|
| Organization name |
Institut Curie
|
| Department |
Genetics
|
| Lab |
U830
|
| Street address |
26 rue d'Ulm
|
| City |
Paris |
| ZIP/Postal code |
75248 cedex 05 |
| Country |
France |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE7007 |
Ewing samples and EWS-FLI-1 inhibited Ewing cell lines |
|
| Relations |
| Reanalyzed by |
GSE86363 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
VALUE |
| ABS_CALL |
ABS_CALL |
| DETECTION-P-VALUE |
DETECTION-P-VALUE |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION-P-VALUE |
| AFFX-BioB-5_at |
41.3043 |
P |
0.00499819 |
| AFFX-BioB-M_at |
64.4111 |
P |
0.000509415 |
| AFFX-BioB-3_at |
36.6999 |
P |
0.00933744 |
| AFFX-BioC-5_at |
131.338 |
P |
0.000126798 |
| AFFX-BioC-3_at |
95.1053 |
P |
5.16732e-05 |
| AFFX-BioDn-5_at |
264.799 |
P |
6.02111e-05 |
| AFFX-BioDn-3_at |
661.012 |
P |
0.000195116 |
| AFFX-CreX-5_at |
1282.09 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
2032.18 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
6.41696 |
A |
0.216524 |
| AFFX-DapX-M_at |
4.52113 |
A |
0.354453 |
| AFFX-DapX-3_at |
0.956264 |
A |
0.868639 |
| AFFX-LysX-5_at |
4.35879 |
A |
0.227636 |
| AFFX-LysX-M_at |
2.42958 |
A |
0.60308 |
| AFFX-LysX-3_at |
0.903441 |
A |
0.824672 |
| AFFX-PheX-5_at |
0.897943 |
A |
0.876428 |
| AFFX-PheX-M_at |
0.675702 |
A |
0.916408 |
| AFFX-PheX-3_at |
18.0408 |
A |
0.185131 |
| AFFX-ThrX-5_at |
1.71111 |
A |
0.686277 |
| AFFX-ThrX-M_at |
5.43644 |
A |
0.544587 |
Total number of rows: 22283
Table truncated, full table size 672 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM161546.CEL.gz |
3.5 Mb |
(ftp)(http) |
CEL |
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