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Sample GSM16263 Query DataSets for GSM16263
Status Public on May 10, 2004
Title GC2_SARB55_LT2_2D633_1
Sample type genomic
 
Channel 1
Source name SARB55 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB55/LT2
User - PCheng
Date_of_Scan = Thu Feb 13 18:21:55 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2730 3630 4740.145996 32.705883 4031.929688 90.036819 184.033096 17800 44.135807 0.946696 0.895889 0.997467 52.646751 0.847213 2944.535889 41.14706 2319.183105 198.566971 168.50296 15300 44.135807 0.901224 0.935593 0.997223 14.828931 0.875449 1 1 1 1 1 1 1 1 1 1 1 1 1 4707.440113 2903.388829 40.03652627 40.31055481 0.993202065 -0.002962386
2 2980 3640 1378.963989 29.455883 1155.813843 94.432068 173.161194 13900 39.997749 0.90998 0.969719 0.997086 14.602709 0.86698 1000.887939 21.955883 877.835083 90.820869 157.569595 11600 39.997749 0.904948 0.977219 0.996674 11.020462 0.895328 1 1 1 1 1 1 1 1 1 1 1 1 1 1349.508106 978.932056 11.47749423 13.5914604 0.844463648 -0.073419041
3 3230 3640 6014.566895 66.058823 5247.830078 197.847885 183.860046 18700 39.997749 0.957671 0.876465 0.994148 30.399955 0.847527 4206.044434 30.264706 3027.57373 115.100945 167.745636 15800 39.997749 0.891593 0.925652 0.997025 36.542223 0.876826 1 1 1 1 1 1 1 1 1 1 1 1 1 5948.508072 4175.779728 50.59174285 57.97638812 0.872626676 -0.059171515
4 3470 3640 3377.235596 144.852936 2780.412109 374.580566 178.233932 17400 30.648439 0.923176 0.929314 0.990128 9.016046 0.857756 2068.229248 29.75 1547.73584 120.359459 170.941086 15700 30.648439 0.894125 0.961967 0.997452 17.18377 0.871016 1 1 1 1 1 1 1 1 1 1 1 1 1 3232.38266 2038.479248 27.49124156 28.30217869 0.971347183 -0.012625515
5 3730 3650 4865.435059 124.852943 4945.050781 263.653687 190.157852 21600 38.100796 0.968848 0.900452 0.993301 18.453886 0.836077 3571.647461 105.705879 3078.772949 255.004837 185.239883 17300 38.100796 0.950291 0.928543 0.991638 14.006195 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 4740.582116 3465.941582 40.31839723 48.12101869 0.837854192 -0.076831553
6 3970 3640 5332.842773 63.485294 7157.021973 135.041122 184.033096 21000 30.648439 0.955916 0.889046 0.996262 39.49051 0.847213 3628.994141 21.82353 3235.25 110.525871 176.077789 17000 30.648439 0.920541 0.911064 0.998787 32.833889 0.861677 1 1 1 1 1 1 1 1 1 1 1 1 1 5269.357479 3607.170611 44.8156034 50.08183788 0.89484742 -0.04825101
7 4220 3650 4545.243164 459.647064 4401.075195 2107.673584 183.860046 17700 28.127876 0.95023 0.90477 0.927559 2.156521 0.575072 3108.146729 173.25 2430.184082 879.453369 177.159134 15000 28.127876 0.944842 0.941246 0.976311 3.53418 0.819305 1 1 1 1 0 0 1 1 1 1 1 1 1 4085.5961 2934.896729 34.74777621 40.74800946 0.852747819 -0.069179382
8 4470 3650 4388.071289 76.735291 3730.683105 188.761688 182.295258 18200 28.127876 0.944607 0.913345 0.994179 23.24662 0.850372 2730.120361 52.25 2078.507324 172.529327 166.984879 15800 28.127876 0.9026 0.945686 0.993393 15.824094 0.878209 1 1 1 1 1 1 1 1 1 1 1 1 1 4311.335998 2677.870361 36.66768196 37.17946383 0.986234824 -0.006019667
9 4720 3650 4584.346191 75.147057 3836.238281 200.273422 187.799744 17900 28.127876 0.958351 0.911346 0.994026 22.890437 0.840364 3063.451172 27.382353 2305.584717 83.482422 162.149323 16400 28.127876 0.922188 0.944672 0.997513 36.695763 0.887001 1 1 1 1 1 1 1 1 1 1 1 1 1 4509.199134 3036.068819 38.35049735 42.15267942 0.909799754 -0.041054185
10 4970 3660 4905.81543 75.867645 4673.918457 148.634979 181.945694 19500 29.034945 0.947503 0.89151 0.995888 33.005793 0.851008 3071.696533 23.735294 2512.701416 105.42276 181.068848 16800 29.034945 0.954744 0.940079 0.997513 29.136939 0.852602 1 1 1 1 1 1 1 1 1 1 1 1 1 4829.947785 3047.961239 41.07844746 42.31779339 0.970713361 -0.012908993
11 5220 3660 5830.96875 59.294117 5199.428711 146.301682 188.982483 19100 29.034945 0.959972 0.879799 0.995193 39.855788 0.838214 3603.531494 41.014706 2894.21875 130.514084 173.161194 17500 29.034945 0.950721 0.93129 0.995735 27.610288 0.86698 1 1 1 1 1 1 1 1 1 1 1 1 1 5771.674633 3562.516788 49.08778391 49.46186567 0.992436966 -0.003297068
12 5480 3660 4004.605225 84.352943 3063.626709 180.959778 176.077789 19000 38.775265 0.938922 0.929527 0.994362 22.129808 0.861677 2723.662842 44.735294 1911.728516 124.353203 169.820145 17500 38.775265 0.905007 0.951324 0.995834 21.902635 0.873054 1 1 1 1 1 1 1 1 1 1 1 1 1 3920.252282 2678.927548 33.34153589 37.19414178 0.896419014 -0.04748894
13 5720 3660 6229.35791 103.5 6048.148438 206.203674 188.982483 21500 29.034945 0.965169 0.866837 0.994362 30.209733 0.838214 4269.543945 39.367645 3239.671631 136.653275 176.619293 17100 29.034945 0.938004 0.926956 0.99794 31.243627 0.860692 1 1 1 1 1 1 1 1 1 1 1 1 1 6125.85791 4230.1763 52.10009373 58.73162833 0.887087507 -0.052033537
14 5970 3670 3430.098145 115.308823 3450.25415 255.978851 188.645309 21400 33.088947 0.960424 0.918839 0.990662 13.399928 0.838827 2368.748535 23.205883 1980.821411 88.438789 178.946869 17500 33.088947 0.969049 0.952873 0.997238 26.784045 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 3314.789322 2345.542652 28.19210581 32.56543688 0.86570636 -0.062629392
15 6220 3670 3980.004395 135.985291 5183.139648 232.597946 184.378693 22300 33.088947 0.953818 0.920364 0.993958 17.11109 0.846584 2914.240967 44.691177 5096.155762 115.251869 185.239883 19500 33.088947 0.952509 0.938583 0.996666 25.285846 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 3844.019104 2869.54979 32.69317679 39.84073471 0.820596734 -0.085870216
16 6470 3670 4261.373047 141.25 3946.841553 229.256638 187.630173 21700 33.088947 0.959953 0.90715 0.993927 18.587785 0.840672 2865.036865 52.058823 2216.552002 140.779373 185.583237 19000 33.088947 0.945545 0.94194 0.996284 20.351255 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 4120.123047 2812.978042 35.04142605 39.05529442 0.897226012 -0.047098144
17 6720 3680 3638.4104 81.191177 3387.766602 190.769012 183.339935 21200 39.328476 0.957354 0.919701 0.995834 19.072334 0.848473 3024.2229 37.970589 2333.555664 90.640999 172.239624 17500 39.328476 0.954203 0.946465 0.997185 33.364845 0.868655 1 1 1 1 1 1 1 1 1 1 1 1 1 3557.219223 2986.252311 30.25395915 41.46102866 0.729696298 -0.136857857
18 6970 3680 4210.333496 88.176468 3590.125244 162.511993 187.630173 20700 39.328476 0.958026 0.918701 0.995728 25.907832 0.840672 2637.602051 69.088234 2131.506836 203.879227 183.686844 19100 39.328476 0.952305 0.952003 0.994827 12.937081 0.847842 1 1 1 1 1 1 1 1 1 1 1 1 1 4122.157028 2568.513817 35.05872495 35.66116118 0.983106657 -0.007399363
19 2720 3880 2732.92627 56.35294 2778.968018 140.32402 177.518127 16300 35.88142 0.951929 0.940308 0.995407 19.475826 0.859058 1776.142822 47.544117 1546.98938 144.733353 169.820145 13300 35.88142 0.925945 0.962822 0.995178 12.271828 0.873054 1 1 1 1 1 1 1 1 1 1 1 1 1 2676.57333 1728.598705 22.76411295 23.99980745 0.948512316 -0.022957026
20 2980 3880 4045.894531 48.205883 4052.908203 153.246414 178.946869 16100 44.135807 0.922601 0.905205 0.994522 26.401235 0.85646 2994.645752 8.323529 2908.804932 52.202087 174.077881 14400 44.135807 0.936737 0.918587 0.998817 57.366399 0.865313 1 1 1 1 1 1 1 1 1 1 1 1 1 3997.688648 2986.322223 34.00012804 41.46199932 0.820031079 -0.086169688

Total number of rows: 5184

Table truncated, full table size 1752 Kbytes.




Supplementary data files not provided
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